Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016291.1 Corchorus olitorius cultivar O-4 contig16324, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5968
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1320 original size:16 final size:15

Alignment explanation


    Indices: 1299--1328  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       1289 GAGGAAGAAG

                            
       1299 AAGAAAAAGAAAAAGA
          1 AAGAAAAA-AAAAAGA

                          
       1315 AAGAAAAAAAAAAG
          1 AAGAAAAAAAAAAG

       1329 GCCGTTTGGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    6  0.43
  16    8  0.57

ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00


Consensus pattern (15 bp):   
AAGAAAAAAAAAAGA
Done.