Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016292.1 Corchorus olitorius cultivar O-4 contig16325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81220

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1566--1601
17
2.1
17
100
0
72
22
25
25
27
2.00
4393--4426
16
2.1
17
88
5
52
11
38
0
50
1.39
12268--12309
12
3.3
12
87
12
50
57
4
30
7
1.47
16294--16322
2
14.5
2
100
0
58
0
0
48
51
1.00
21795--21819
6
4.2
6
100
0
50
32
20
16
32
1.94
26409--26453
7
6.4
7
100
0
90
28
0
42
28
1.56
42072--42109
19
2.0
19
100
0
76
47
31
5
15
1.68
42342--42403
23
3.0
22
82
17
80
30
19
0
50
1.48
42369--42436
17
4.0
17
78
14
86
33
16
0
50
1.45
42379--42451
34
2.1
34
100
0
146
36
15
0
47
1.45
42396--42451
17
3.3
17
72
18
62
39
14
0
46
1.44
42474--42576
50
2.1
50
96
0
188
47
19
0
32
1.56
42476--42564
27
3.4
27
68
24
82
49
19
1
30
1.55
45135--45305
81
2.1
81
97
0
324
33
12
23
29
1.92
63887--64008
62
2.0
62
95
0
217
38
11
0
50
1.39
64776--64800
2
12.5
2
100
0
50
52
0
0
48
1.00
65561--65601
22
1.9
22
85
5
57
73
7
9
9
1.26
67759--67829
29
2.4
30
81
11
83
32
9
23
33
1.88
68756--68849
45
2.2
43
88
7
138
37
22
6
34
1.80
75970--76017
24
2.1
22
84
7
60
16
20
0
62
1.33

Tables:   1

The End!