Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016296.1 Corchorus olitorius cultivar O-4 contig16329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9079
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32


Found at i:3277 original size:111 final size:111

Alignment explanation


    Indices: 3083--3304  Score: 417
    Period size: 111  Copynumber: 2.0  Consensus size: 111

       3073 AAAAAAAAAG

                                                          *                  
       3083 AAAGAAAAATCTTGGACAAGGTATTCCTTCTTTTATTAAATCCATGTTCAAAGCCAAAGAAGAAC
          1 AAAGAAAAATCTTGGACAAGGTATTCCTTCTTTTATTAAATCCATGCTCAAAGCCAAAGAAGAAC

                                                          
       3148 CAAATTGAAAACAAGAATTAGATGAAAATATTGACGTCAATGGCAA
         66 CAAATTGAAAACAAGAATTAGATGAAAATATTGACGTCAATGGCAA

                                     *                                       
       3194 AAAGAAAAATCTTGGACAAGGTATTGCTTCTTTTATTAAATCCATGCTCAAAGCCAAAGAAGAAC
          1 AAAGAAAAATCTTGGACAAGGTATTCCTTCTTTTATTAAATCCATGCTCAAAGCCAAAGAAGAAC

                   *                                      
       3259 CAAATTGTAAACAAGAATTAGATGAAAATATTGACGTCAATGGCAA
         66 CAAATTGAAAACAAGAATTAGATGAAAATATTGACGTCAATGGCAA

       3305 TTTCTTCTTC


Statistics
Matches: 108,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 111  108  1.00

ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25


Consensus pattern (111 bp):   
AAAGAAAAATCTTGGACAAGGTATTCCTTCTTTTATTAAATCCATGCTCAAAGCCAAAGAAGAAC
CAAATTGAAAACAAGAATTAGATGAAAATATTGACGTCAATGGCAA
Done.