Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016297.1 Corchorus olitorius cultivar O-4 contig16330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3165
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30


Found at i:2947 original size:26 final size:28

Alignment explanation


    Indices: 2918--2982  Score: 75
    Period size: 26  Copynumber: 2.4  Consensus size: 28

       2908 AAAGAAGGAG

                          *             
       2918 AAAAGAAAAATGAAGA-AAAGAA-TTGA
          1 AAAAGAAAAATGAAAAGAAAGAAGTTGA

                                        
       2944 AAAAG-AAAA-GAAAAGAAAGAAGTTGA
          1 AAAAGAAAAATGAAAAGAAAGAAGTTGA

               *         
       2970 AAATGTAAAAATG
          1 AAAAG-AAAAATG

       2983 GAGTAAAACA


Statistics
Matches: 32,  Mismatches: 2, Indels: 7
        0.78            0.05        0.17

Matches are distributed among these distances:
  24    4  0.12
  25   10  0.31
  26   13  0.41
  28    4  0.12
  29    1  0.03

ACGTcount: A:0.68, C:0.00, G:0.20, T:0.12


Consensus pattern (28 bp):   
AAAAGAAAAATGAAAAGAAAGAAGTTGA
Done.