genome.fa.s16298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016298.1 Corchorus olitorius cultivar O-4 contig16331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66273

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2135--2278	54	2.7	54	92	1	227	33	15	18	32	1.92
2262--2469	35	5.9	35	87	1	301	26	14	21	37	1.91
2262--2469	104	2.0	106	89	1	321	26	14	21	37	1.91
2483--3297	35	23.2	35	89	2	1159	27	13	19	40	1.89
2397--2557	88	1.8	88	89	0	250	27	13	21	37	1.91
2263--3297	246	4.3	245	87	5	1166	27	13	19	39	1.90
4553--4713	86	1.9	85	89	3	252	42	4	16	36	1.69
12916--13114	45	4.4	45	88	0	254	22	42	2	32	1.67
14765--14803	20	1.9	21	89	5	62	28	2	2	66	1.18
14827--14875	20	2.5	20	93	0	80	20	30	18	30	1.96
15380--15424	22	2.0	22	82	0	54	80	15	0	4	0.87
17117--17168	25	2.0	25	88	3	77	55	9	1	32	1.43
38104--38145	21	2.0	21	86	4	59	50	4	11	33	1.60
39227--39276	24	2.0	24	84	7	64	42	2	4	52	1.31
46239--46284	23	2.0	23	82	0	56	50	6	15	28	1.69
57997--58025	13	2.2	13	100	0	58	55	6	20	17	1.65
59759--59800	19	2.3	18	88	8	66	64	0	2	33	1.07
59764--59800	19	2.0	19	94	5	67	67	0	0	32	0.91
61802--62210	222	1.8	226	85	4	585	35	17	17	30	1.93
62036--62409	199	1.9	199	89	2	590	33	19	20	27	1.96
63662--63700	20	2.0	20	85	10	53	28	5	2	64	1.28
63852--64065	22	9.6	22	70	9	121	37	9	14	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63849--64036	66	2.8	66	77	7	166	36	9	15	38	1.81
64089--64157	22	3.1	21	76	13	68	39	5	18	36	1.75
64545--64653	57	1.9	57	98	0	209	31	15	26	26	1.96
64801--64827	4	6.8	4	100	0	54	77	0	0	22	0.76
65050--65116	31	2.2	31	92	5	111	47	11	19	20	1.81
65237--65315	31	2.5	31	93	0	131	35	16	11	36	1.85

Tables:   1

The End!