Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016300.1 Corchorus olitorius cultivar O-4 contig16333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26689

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1566--1663
33
3.0
32
86
3
124
18
37
33
10
1.84
1614--1695
33
2.5
33
84
4
103
18
36
35
9
1.84
1635--1742
18
6.3
18
74
18
106
17
39
32
10
1.83
1635--1742
50
2.1
52
91
3
184
17
39
32
10
1.83
1679--1767
33
2.7
33
89
5
128
16
34
34
13
1.88
1686--1790
33
3.2
33
82
4
88
16
37
33
13
1.87
1916--1954
19
2.1
19
95
0
69
33
0
30
35
1.58
3751--3862
56
2.0
57
98
1
217
33
25
1
39
1.66
3933--4013
42
1.9
42
97
0
153
29
7
16
46
1.73
7661--7746
16
5.4
16
74
13
88
30
34
20
13
1.92
7648--7746
32
3.1
31
82
7
119
30
35
21
13
1.91
16893--16931
2
19.5
2
100
0
78
0
0
48
51
1.00
19077--19146
30
2.3
29
85
11
88
21
15
22
40
1.91
19270--19309
13
3.1
14
75
17
50
67
0
2
30
1.04
26163--26689
22
24.2
22
68
12
198
35
15
10
38
1.83
26228--26268
21
1.9
22
90
5
66
31
12
4
51
1.60
26292--26379
45
2.0
45
84
4
115
38
17
11
32
1.85
26478--26536
23
2.6
24
82
15
72
38
22
3
35
1.71

Tables:   1

The End!