Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016301.1 Corchorus olitorius cultivar O-4 contig16334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43578

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82--128
15
3.2
14
80
14
51
48
0
2
48
1.13
375--409
14
2.5
14
100
0
70
37
8
20
34
1.83
11341--11372
15
2.1
16
94
5
57
37
3
0
59
1.13
13607--14696
483
2.3
483
90
2
1730
33
18
14
33
1.91
15171--15208
19
1.9
19
89
5
58
28
5
5
60
1.40
15365--15467
22
4.8
21
72
11
68
37
9
16
35
1.82
15368--15467
43
2.3
44
81
8
107
39
10
16
35
1.82
15434--15486
22
2.4
22
84
6
63
39
13
15
32
1.85
15603--16936
22
61.0
21
67
15
360
38
9
16
34
1.82
16257--16336
23
3.5
23
91
1
117
37
6
17
38
1.75
16897--16943
22
2.2
22
85
11
62
46
10
17
25
1.79
22053--22084
9
3.6
9
95
0
55
50
0
18
31
1.48
23278--23406
49
2.7
49
83
8
142
28
17
6
46
1.74
23668--23763
33
2.9
33
79
0
111
13
33
36
16
1.88
30627--30653
13
2.1
13
100
0
54
37
7
14
40
1.74
35658--35695
8
4.8
8
100
0
76
39
13
34
13
1.83

Tables:   1

The End!