Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016306.1 Corchorus olitorius cultivar O-4 contig16339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46837

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2072--2113
14
2.8
15
76
23
52
38
33
4
23
1.76
7102--7167
18
3.7
18
75
0
69
18
30
22
28
1.97
13116--13221
53
2.0
53
100
0
212
22
24
30
22
1.99
14257--14295
15
2.6
15
100
0
78
30
15
25
28
1.96
14632--14677
15
2.8
15
84
15
56
47
2
0
50
1.13
17728--17764
15
2.5
15
87
12
51
83
0
0
16
0.64
28749--28774
13
2.0
13
100
0
52
38
23
0
38
1.55
28536--28999
233
2.0
233
99
0
919
32
17
15
33
1.92
29838--29878
21
2.0
21
95
0
73
36
4
31
26
1.78
34647--34810
84
2.0
84
93
2
285
43
12
14
30
1.81
40296--40386
30
3.0
30
67
12
87
29
10
25
34
1.90
40273--40400
60
2.1
60
92
2
213
33
10
23
32
1.88
42244--42290
21
2.1
23
88
11
71
36
17
12
34
1.87
44504--44535
11
2.9
11
100
0
64
25
37
28
9
1.87
45129--45181
24
2.4
21
77
17
61
43
3
16
35
1.67

Tables:   1

The End!