Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016309.1 Corchorus olitorius cultivar O-4 contig16342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64637

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3617--3928
52
6.0
52
81
15
392
18
28
21
31
1.97
3672--3759
44
2.0
44
97
0
167
21
27
21
29
1.99
3605--3937
159
2.0
160
94
5
589
17
26
20
35
1.95
11764--11957
13
15.7
12
67
16
71
35
8
24
31
1.85
11791--11930
63
2.2
63
100
0
280
33
10
25
31
1.89
11871--11960
37
2.4
37
90
0
153
31
6
24
37
1.81
11791--11954
63
2.6
62
92
3
231
34
8
24
32
1.86
12243--12279
19
2.0
19
89
5
58
35
0
0
64
0.94
14180--14215
18
2.0
18
94
0
63
52
11
8
27
1.65
14254--14292
2
21.5
2
80
19
50
48
0
0
51
1.00
14500--14545
23
2.0
22
84
12
58
21
21
6
50
1.71
14549--14758
68
3.1
68
71
16
238
31
17
11
39
1.86
14530--14864
65
5.1
66
71
16
223
32
16
11
40
1.83
14530--14813
133
2.1
133
98
0
541
32
17
10
39
1.84
14781--14822
22
1.9
22
85
0
57
38
16
2
42
1.61
14996--15054
22
2.7
22
86
2
84
49
8
13
28
1.71
18597--18623
13
2.1
13
100
0
54
0
14
0
85
0.61
21821--21852
16
2.0
16
93
0
55
46
0
0
53
1.00
21821--21868
18
2.5
19
83
10
62
52
0
0
47
1.00
30476--30531
28
2.0
27
96
3
103
42
14
3
39
1.63
34389--34418
2
15.5
2
93
6
53
53
0
0
46
1.00
45455--45533
31
2.5
33
80
15
96
30
34
7
27
1.85

Tables:   1

The End!