Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016310.1 Corchorus olitorius cultivar O-4 contig16343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87813

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
905--939
9
4.0
9
88
3
54
48
0
20
31
1.50
2224--2357
49
2.8
47
82
10
157
28
15
5
50
1.68
6404--6486
41
2.0
41
97
0
157
40
8
21
28
1.82
6883--6934
22
2.4
22
76
0
59
11
25
7
55
1.61
11971--12011
22
1.9
21
85
14
57
17
24
17
41
1.89
15442--15492
24
2.1
24
100
0
102
50
11
25
11
1.72
20183--20233
26
2.0
27
85
11
72
35
11
27
25
1.91
22614--22657
21
2.1
21
91
0
70
40
9
9
40
1.68
22892--23061
31
5.5
31
83
0
214
31
25
25
17
1.97
36502--36742
82
3.0
82
90
3
389
21
18
21
39
1.93
37102--37142
3
13.7
3
100
0
82
65
0
0
34
0.93
38789--39595
401
2.0
401
98
0
1560
41
16
14
26
1.88
40785--40815
11
2.8
11
95
0
53
0
19
0
80
0.71
41223--41328
52
2.1
51
96
1
194
33
14
16
36
1.88
41955--41986
2
16.5
2
93
6
57
50
0
0
50
1.00
42422--42463
22
1.9
22
90
0
66
38
23
21
16
1.93
43112--43154
15
2.8
15
76
16
52
34
32
20
11
1.89
43580--43782
105
2.0
103
89
5
313
52
1
11
34
1.49
46788--47035
124
2.0
124
98
0
478
29
22
22
25
1.99
48924--49018
46
2.0
47
92
6
158
34
12
2
50
1.52
49802--49858
25
2.4
24
88
5
80
31
5
3
59
1.36
77209--77370
61
2.6
61
96
0
288
38
8
17
35
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82149--82178
15
1.9
16
93
6
53
60
13
13
13
1.60
83409--83489
39
2.0
40
92
2
137
50
8
3
37
1.51
83961--83994
17
2.0
17
100
0
68
29
11
11
47
1.76
85336--85388
12
4.4
13
81
11
60
45
9
5
39
1.60
85561--85601
19
2.2
19
86
0
55
60
19
7
12
1.54
86593--86646
14
3.7
14
78
12
56
1
29
0
68
1.00
86593--86652
7
8.4
7
78
7
50
1
28
0
70
0.97
86593--86648
15
3.8
15
70
13
53
1
30
0
67
1.01
86644--86668
5
5.0
5
100
0
50
0
20
0
80
0.72
86796--86833
3
13.0
3
94
5
69
0
31
0
68
0.90

Tables:   1

The End!