Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016315.1 Corchorus olitorius cultivar O-4 contig16348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42403

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--72
22
2.1
22
84
8
58
32
21
21
23
1.98
3696--3746
24
2.1
25
85
3
68
17
5
5
70
1.28
8550--8574
13
1.9
13
100
0
50
48
4
0
48
1.20
19319--19393
29
2.6
28
87
4
96
42
13
22
21
1.87
23009--23085
32
2.5
32
87
4
113
28
19
23
28
1.98
26039--26105
31
2.2
31
89
5
102
47
7
19
25
1.75
26203--26344
31
4.6
31
77
6
128
35
15
9
39
1.81
28469--28570
31
3.4
31
83
2
109
41
9
14
34
1.79
32421--32477
30
2.0
27
83
12
71
42
15
22
19
1.89
38488--38545
31
1.9
30
83
13
75
39
15
22
22
1.91
39648--39782
46
2.9
46
95
0
252
44
14
13
27
1.83

Tables:   1

The End!