Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016316.1 Corchorus olitorius cultivar O-4 contig16349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29629

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109--223
57
2.0
56
93
1
194
31
24
1
42
1.65
1132--1193
25
2.6
24
87
5
81
59
4
6
29
1.43
1862--2612
373
2.0
379
96
1
1406
48
3
11
35
1.58
8642--8705
31
2.2
30
83
8
78
32
29
21
15
1.95
9440--9480
21
1.9
22
90
5
66
46
29
14
9
1.77
10739--10785
22
2.1
22
84
7
60
61
2
12
23
1.42
10667--10846
93
1.9
93
93
2
308
52
2
12
33
1.51
10882--10943
31
2.0
31
96
0
115
41
4
22
30
1.74
14199--14251
26
2.0
26
92
0
88
43
18
15
22
1.87
18545--18569
6
4.2
6
100
0
50
52
16
16
16
1.76
20498--20551
25
2.2
25
96
0
99
51
12
18
16
1.75
23328--23353
3
8.7
3
100
0
52
34
30
0
34
1.58
27446--27485
20
2.0
20
100
0
80
35
25
20
20
1.96
27846--28005
79
2.0
79
100
0
320
28
24
15
32
1.95
28079--28121
10
4.1
10
80
11
50
27
6
0
65
1.18

Tables:   1

The End!