Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016319.1 Corchorus olitorius cultivar O-4 contig16352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139484

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90--288
86
2.3
84
78
12
226
49
4
12
34
1.59
1120--1211
21
4.4
21
90
0
139
26
11
21
40
1.88
2958--3161
113
1.8
113
91
0
336
30
29
23
16
1.96
5818--5920
33
3.1
33
97
0
197
5
32
6
55
1.50
6899--6955
30
1.9
30
96
0
105
56
12
22
8
1.63
16051--16084
11
2.9
11
91
8
50
79
8
2
8
1.03
16827--16882
29
1.9
29
88
0
85
39
26
25
8
1.85
17263--17539
132
2.0
136
86
8
384
43
9
15
32
1.78
23319--23667
118
3.0
118
86
2
418
38
13
14
33
1.85
23400--23667
118
2.3
117
92
1
439
42
13
13
30
1.84
23826--24077
120
2.0
127
88
8
383
37
11
1
49
1.49
24398--24427
16
1.9
16
93
6
53
23
0
26
50
1.50
24563--24698
34
4.0
34
97
1
256
33
8
25
32
1.85
24563--24698
67
2.0
68
97
1
256
33
8
25
32
1.85
29891--30015
58
2.1
60
88
4
182
32
14
13
40
1.85
31448--31479
2
16.5
2
93
6
57
50
0
0
50
1.00
31448--31491
19
2.4
19
85
11
56
47
2
0
50
1.13
35536--35583
12
3.9
12
88
2
51
22
20
31
25
1.98
35541--35583
12
3.5
12
90
3
59
20
20
32
25
1.97
35552--35587
6
6.0
6
93
0
63
16
19
33
30
1.94
39118--39156
20
2.0
20
100
0
78
43
10
20
25
1.83
42520--42553
6
5.7
6
92
0
59
20
17
26
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51227--51294
34
2.0
34
100
0
136
35
20
17
26
1.95
55164--55190
3
9.0
3
100
0
54
33
33
0
33
1.58
71896--72233
166
2.0
167
92
2
563
19
34
10
36
1.86
72372--72409
18
2.1
19
85
5
51
7
60
0
31
1.25
78461--78501
3
13.7
3
100
0
82
31
0
0
68
0.90
82479--82506
8
3.5
8
100
0
56
39
0
25
35
1.56
86086--86110
12
2.1
12
100
0
50
40
16
16
28
1.89
89405--89455
16
3.1
17
76
23
56
3
15
23
56
1.56
89405--89443
17
2.4
16
87
12
53
2
17
28
51
1.59
92617--92658
21
2.0
21
100
0
84
23
14
9
52
1.71
94328--94354
2
13.5
2
100
0
54
48
0
0
51
1.00
94409--94449
20
2.0
21
85
4
57
41
0
14
43
1.45
95723--95747
12
2.1
12
100
0
50
40
16
16
28
1.89
99241--99352
56
2.0
56
100
0
224
42
17
14
25
1.87
110003--110062
26
2.3
26
100
0
120
28
13
41
16
1.86
122311--122446
70
1.9
70
95
2
247
41
31
7
19
1.79
122394--122507
56
2.0
56
98
0
219
44
31
4
19
1.70
128045--128086
14
2.8
16
78
14
61
21
7
33
38
1.81
138340--138512
79
2.2
78
95
1
310
19
25
31
23
1.98
138567--138642
29
2.6
29
82
2
107
39
15
26
18
1.91

Tables:   1

The End!