Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016320.1 Corchorus olitorius cultivar O-4 contig16353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36249

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
279--344
32
2.1
32
82
5
80
34
1
16
46
1.56
4073--4116
15
2.9
15
79
3
52
50
0
0
50
1.00
5369--5410
12
3.7
12
81
9
52
42
0
7
50
1.30
8121--8164
14
3.1
14
80
0
52
9
11
18
61
1.55
8129--8172
14
3.1
14
80
0
52
9
15
15
59
1.61
8276--8425
37
4.2
37
71
13
152
12
15
13
58
1.63
8271--8398
68
1.9
69
91
1
213
14
14
14
57
1.67
8277--8489
105
2.1
102
81
10
247
14
15
13
57
1.66
8475--8556
38
2.0
41
86
9
116
12
12
14
60
1.58
15660--15735
29
2.6
29
82
2
107
18
26
15
39
1.91
15790--15961
78
2.2
78
96
0
317
23
31
25
19
1.98
23217--23370
84
1.8
84
97
0
290
29
16
18
34
1.94
26575--26631
27
2.1
27
86
0
78
28
17
28
26
1.98
26664--26735
33
2.2
33
97
0
135
59
11
8
20
1.57
26663--26747
33
2.8
29
83
15
116
57
11
9
21
1.62
27072--27133
30
2.0
31
96
3
117
43
9
25
20
1.83
27072--27146
32
2.4
32
91
6
118
45
9
24
21
1.81
28947--29104
80
2.0
80
96
0
289
24
33
10
31
1.89
29569--29610
22
1.9
22
100
0
84
71
0
14
14
1.15
29569--29611
12
3.8
12
78
12
54
69
0
13
16
1.19
34536--34591
28
2.0
28
89
3
87
32
14
3
50
1.60
35292--35318
4
6.8
4
100
0
54
77
0
0
22
0.76

Tables:   1

The End!