Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016322.1 Corchorus olitorius cultivar O-4 contig16355, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3992
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37


Found at i:3688 original size:45 final size:45

Alignment explanation


    Indices: 3624--3752  Score: 231
    Period size: 45  Copynumber: 2.9  Consensus size: 45

       3614 AGCAACAATT

                                                         
       3624 AATATTAGCTTTATTTTGATGAATGATCTAGAGATGGAGGAGTAG
          1 AATATTAGCTTTATTTTGATGAATGATCTAGAGATGGAGGAGTAG

                                          *              
       3669 AATATTAGCTTTATTTTGATGAATGATCTAAAGATGGAGGAGTAG
          1 AATATTAGCTTTATTTTGATGAATGATCTAGAGATGGAGGAGTAG

                                    * *            
       3714 AATATTAGCTTTATTTTGATGAATTACCTAGAGATGGAG
          1 AATATTAGCTTTATTTTGATGAATGATCTAGAGATGGAG

       3753 TAGAATTTAG


Statistics
Matches: 80,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  45   80  1.00

ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36


Consensus pattern (45 bp):   
AATATTAGCTTTATTTTGATGAATGATCTAGAGATGGAGGAGTAG
Done.