genome.fa.s16323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016323.1 Corchorus olitorius cultivar O-4 contig16356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174878

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2580--2928	48	7.9	47	69	21	231	17	29	21	32	1.96
2603--2686	38	2.2	38	97	0	159	14	30	25	29	1.95
2689--2920	86	2.7	84	84	6	290	17	28	20	33	1.95
2738--2820	38	2.2	38	89	6	125	19	30	20	30	1.97
2591--2843	134	1.9	134	89	3	393	16	29	21	32	1.95
2689--2927	84	2.8	86	85	3	306	17	28	20	33	1.95
3462--3657	30	6.5	30	96	0	347	29	21	19	30	1.97
4052--4077	11	2.4	11	100	0	52	7	15	7	69	1.35
5034--5317	30	9.6	30	86	6	323	32	19	17	30	1.95
5245--5309	27	2.4	27	97	0	112	36	16	16	29	1.92
7578--7609	12	2.7	12	100	0	64	53	31	15	0	1.43
12155--12276	61	2.0	61	100	0	244	36	16	14	32	1.89
15365--15411	23	2.0	23	100	0	94	21	27	0	51	1.48
21658--21718	32	1.9	32	100	0	122	29	14	14	40	1.86
26710--26787	29	2.7	29	87	2	120	39	15	25	19	1.91
47306--47335	15	1.9	16	93	6	53	43	0	3	53	1.17
47683--49609	332	5.8	331	78	7	1715	34	14	14	36	1.87
47683--49604	651	2.9	655	80	9	1946	34	14	14	36	1.87
50077--50105	15	1.9	15	100	0	58	48	27	6	17	1.72
51528--53656	332	6.5	330	76	9	1835	33	14	15	36	1.88
54927--54969	17	2.5	17	100	0	86	23	13	6	55	1.62
58678--65906	656	11.1	652	81	6	6727	33	13	16	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65406--66481	577	1.9	566	82	6	1333	34	12	16	36	1.86
65909--67808	326	5.9	314	76	11	1595	33	14	16	35	1.89
65974--67774	638	2.8	635	80	7	2002	34	13	16	35	1.89
68908--69366	224	2.0	227	96	1	852	37	17	13	32	1.88
76153--76182	1	30.0	1	100	0	60	100	0	0	0	0.00
77726--77783	27	2.2	26	81	9	71	32	6	18	41	1.78
80302--80339	13	2.9	13	88	7	51	84	5	10	0	0.77
81512--81541	15	2.0	15	100	0	60	33	13	0	53	1.40
90404--90477	35	2.1	35	92	2	123	27	17	14	40	1.89
90521--90552	16	2.0	16	93	0	55	53	0	0	46	1.00
90505--90552	19	2.5	19	83	10	62	47	0	0	52	1.00
90686--90720	18	1.9	18	94	0	61	28	8	11	51	1.67
120345--120396	26	2.0	26	100	0	104	19	26	3	50	1.65
165342--165431	45	2.0	45	89	4	137	31	15	16	36	1.90
169551--169690	21	6.2	21	80	9	136	27	40	10	21	1.86
169566--169690	21	5.7	21	82	8	142	27	38	11	23	1.88
169545--169690	45	3.3	42	81	11	139	28	39	10	21	1.86
169668--169783	33	3.8	33	77	19	142	30	37	11	20	1.88
169701--169748	24	2.0	24	100	0	96	20	41	12	25	1.87
169647--169781	57	2.4	57	94	0	243	28	37	11	21	1.89
169815--169888	21	3.4	21	83	5	85	24	36	14	24	1.93
169957--169992	18	2.0	18	89	10	56	22	44	5	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169989--170126	45	3.1	45	96	0	258	18	42	11	27	1.84
170021--170094	24	3.2	24	63	24	59	17	43	12	27	1.84
170018--170098	27	3.3	26	68	28	79	16	44	11	28	1.81
172502--172709	102	2.0	102	98	0	398	36	10	22	31	1.87
174350--174401	15	3.4	15	78	10	61	57	5	0	36	1.23
174359--174415	15	3.9	14	79	9	60	52	5	0	42	1.24
174352--174412	29	2.1	29	90	6	97	52	6	0	40	1.27

Tables:   1

The End!