Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016324.1 Corchorus olitorius cultivar O-4 contig16357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78039
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Found at i:2266 original size:56 final size:56
Alignment explanation
Indices: 2199--2305 Score: 169
Period size: 56 Copynumber: 1.9 Consensus size: 56
2189 TAGGTGAATT
* *
2199 GTTTTTGCAAACTTTTTTTAATAGTAGTTTAATATCAACTGGCCCATTGGCAAGTA
1 GTTTTTGCAAACTTTTTATAATAATAGTTTAATATCAACTGGCCCATTGGCAAGTA
* * *
2255 GTTTTTGCAAACTTTTTATAATAATGGTTTAATATTAAGTGGCCCATTGGC
1 GTTTTTGCAAACTTTTTATAATAATAGTTTAATATCAACTGGCCCATTGGC
2306 TCATGAGTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 46 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42
Consensus pattern (56 bp):
GTTTTTGCAAACTTTTTATAATAATAGTTTAATATCAACTGGCCCATTGGCAAGTA
Found at i:5016 original size:17 final size:16
Alignment explanation
Indices: 4969--5017 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 16
4959 ATAAACCCAT
4969 GTAATCTTTGATCACCG
1 GTAATC-TTGATCACCG
*
4986 GTGATCTTGCATCACCG
1 GTAATCTTG-ATCACCG
5003 GTAATCTTAGATCAC
1 GTAATCTT-GATCAC
5018 TAGTGATCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 3 0.11
17 24 0.86
18 1 0.04
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (16 bp):
GTAATCTTGATCACCG
Found at i:14212 original size:13 final size:13
Alignment explanation
Indices: 14191--14225 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
14181 CCTTGGTTTG
*
14191 TTTTGTTTTGTGT
1 TTTTTTTTTGTGT
14204 TTTTTTTTTGTGT
1 TTTTTTTTTGTGT
14217 TTTTTTTTT
1 TTTTTTTTT
14226 TTTTCTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (13 bp):
TTTTTTTTTGTGT
Found at i:14224 original size:12 final size:12
Alignment explanation
Indices: 14189--14224 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
14179 GTCCTTGGTT
*
14189 TGTTTTGTTTTG
1 TGTTTTTTTTTG
14201 TGTTTTTTTTTTG
1 TG-TTTTTTTTTG
14214 TGTTTTTTTTT
1 TGTTTTTTTTT
14225 TTTTTCTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (12 bp):
TGTTTTTTTTTG
Found at i:15799 original size:12 final size:12
Alignment explanation
Indices: 15782--15806 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15772 AAAATGTAAC
15782 TGTTCTGGAAGG
1 TGTTCTGGAAGG
15794 TGTTCTGGAAGG
1 TGTTCTGGAAGG
15806 T
1 T
15807 TTATGTCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.40, T:0.36
Consensus pattern (12 bp):
TGTTCTGGAAGG
Found at i:30901 original size:6 final size:6
Alignment explanation
Indices: 30890--30919 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
30880 GAGGCTGCTC
30890 CTGATG CTGATG CTGATG CTGATG CTGATG
1 CTGATG CTGATG CTGATG CTGATG CTGATG
30920 AACCCCAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (6 bp):
CTGATG
Found at i:34677 original size:18 final size:18
Alignment explanation
Indices: 34656--34707 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
34646 TCTTGGAGGC
*
34656 TGCCTCCGATGCCACGGT
1 TGCCTCCGATGCCACCGT
* *
34674 TGCCTCCGCTGCCGCCGT
1 TGCCTCCGATGCCACCGT
34692 TGCCTCC-ACTGCCACC
1 TGCCTCCGA-TGCCACC
34708 AATGCCACCA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.08, C:0.48, G:0.23, T:0.21
Consensus pattern (18 bp):
TGCCTCCGATGCCACCGT
Found at i:41964 original size:19 final size:18
Alignment explanation
Indices: 41942--41977 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
41932 ATTTTTAAGC
41942 AAAAATATAATATATAAAT
1 AAAAATATAATAT-TAAAT
*
41961 AAAAATTTAATATTAAA
1 AAAAATATAATATTAAA
41978 ACAATTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATATAATATTAAAT
Found at i:43718 original size:11 final size:11
Alignment explanation
Indices: 43690--43720 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
43680 AACTTTTAGA
*
43690 GATTCTAAAAT
1 GATTCTGAAAT
43701 GATTCTGAAAT
1 GATTCTGAAAT
43712 GATTCTGAA
1 GATTCTGAA
43721 CAAGAACAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (11 bp):
GATTCTGAAAT
Found at i:45339 original size:54 final size:54
Alignment explanation
Indices: 45265--45373 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
45255 CCGGCGTTGA
45265 AATATGACTATGTACTGCCTTTTACCTACTTCATAATTGCTATTTATGAAAAGT
1 AATATGACTATGTACTGCCTTTTACCTACTTCATAATTGCTATTTATGAAAAGT
45319 AATATGACTATGTACTGCCTTTTACCTACTTCATAATTGCTATTTATGAAAAGT
1 AATATGACTATGTACTGCCTTTTACCTACTTCATAATTGCTATTTATGAAAAGT
45373 A
1 A
45374 TAATGTAAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (54 bp):
AATATGACTATGTACTGCCTTTTACCTACTTCATAATTGCTATTTATGAAAAGT
Found at i:54985 original size:26 final size:25
Alignment explanation
Indices: 54946--55151 Score: 90
Period size: 25 Copynumber: 8.3 Consensus size: 25
54936 GACTTTTTTT
*
54946 TTTATTTTTCACTATTTATCTATTTA
1 TTTATTTTTAACTA-TTATCTATTTA
54972 TTTATTTTTAACTATTATC----TA
1 TTTATTTTTAACTATTATCTATTTA
* *
54993 TTTATTTTTAATTATCATCTATTTA
1 TTTATTTTTAACTATTATCTATTTA
* ** * * * *
55018 TTTACTATTTATTTTTTTTTCAACAATTA
1 TTTA-TTTTTA-ACTATTATC--TATTTA
* *
55047 TCTACTTATTT-ACTATTTATCTTTTTA
1 TTTA-TT-TTTAACTA-TTATCTATTTA
* *
55074 TTTATTTTTAATTATCATCTATTTA
1 TTTATTTTTAACTATTATCTATTTA
* *
55099 TTTACTATTTATCT-TT-T-TATTTA
1 TTTA-TTTTTAACTATTATCTATTTA
* **
55122 -TTA-ATTTAGTTATTATCTATTTA
1 TTTATTTTTAACTATTATCTATTTA
55145 TTTATTT
1 TTTATTT
55152 ATTATTATTT
Statistics
Matches: 133, Mismatches: 30, Indels: 35
0.67 0.15 0.18
Matches are distributed among these distances:
20 6 0.05
21 21 0.16
22 4 0.03
23 12 0.09
24 4 0.03
25 29 0.22
26 29 0.22
27 11 0.08
28 1 0.01
29 13 0.10
30 3 0.02
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTATTTTTAACTATTATCTATTTA
Found at i:55100 original size:44 final size:45
Alignment explanation
Indices: 55046--55148 Score: 163
Period size: 44 Copynumber: 2.3 Consensus size: 45
55036 TTCAACAATT
*
55046 ATCTACTTATTTACTATTTATCTTTTTATTTATT-TTTAATTATC
1 ATCTATTTATTTACTATTTATCTTTTTATTTATTATTTAATTATC
* *
55090 ATCTATTTATTTACTATTTATCTTTTTATTTATTAATTTAGTTATT
1 ATCTATTTATTTACTATTTATCTTTTTATTTATT-ATTTAATTATC
55136 ATCTATTTATTTA
1 ATCTATTTATTTA
55149 TTTATTATTA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
44 33 0.61
46 21 0.39
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (45 bp):
ATCTATTTATTTACTATTTATCTTTTTATTTATTATTTAATTATC
Found at i:55123 original size:27 final size:27
Alignment explanation
Indices: 55044--55154 Score: 81
Period size: 27 Copynumber: 4.2 Consensus size: 27
55034 TTTTCAACAA
*
55044 TTATCTACTTATT-TACTATTTATCTT-T
1 TTATTTACTTATTAT-CTATTTAT-TTAT
* * *
55071 TTATTTA-TTTTTAAT-TATC-ATCTAT
1 TTATTTACTTATT-ATCTATTTATTTAT
*
55096 TTATTTAC-TATTTATCTTTTTATTTAT
1 TTATTTACTTA-TTATCTATTTATTTAT
* *
55123 TAATTTAGTTATTATCTATTTATTTAT
1 TTATTTACTTATTATCTATTTATTTAT
55150 TTATT
1 TTATT
55155 ATTATTTCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
24 1 0.02
25 13 0.20
26 11 0.17
27 36 0.56
28 3 0.05
ACGTcount: A:0.25, C:0.08, G:0.01, T:0.66
Consensus pattern (27 bp):
TTATTTACTTATTATCTATTTATTTAT
Found at i:55137 original size:19 final size:19
Alignment explanation
Indices: 55115--55157 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
55105 ATTTATCTTT
55115 TTATTTATTAATTTAGTTA
1 TTATTTATTAATTTAGTTA
* * *
55134 TTATCTATTTATTTATTTA
1 TTATTTATTAATTTAGTTA
55153 TTATT
1 TTATT
55158 ATTTCTTAGC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (19 bp):
TTATTTATTAATTTAGTTA
Found at i:55181 original size:4 final size:4
Alignment explanation
Indices: 54958--55154 Score: 67
Period size: 4 Copynumber: 50.0 Consensus size: 4
54948 TATTTTTCAC
* * * *
54958 TATT TATC TATT TATT TATT T-TT AACTAT TATC TATT TATT T-TT AATT
1 TATT TATT TATT TATT TATT TATT TA-T-T TATT TATT TATT TATT TATT
* * * * * * *
55006 ATCATC TATT TATT TA-C TATT TATT T-TT T-TT TCA-A CAAT TATC TACT
1 -T-ATT TATT TATT TATT TATT TATT TATT TATT T-ATT TATT TATT TATT
* * *
55053 TATT TA-C TATT TATCT T-TT TATT TATT T-TT AATT ATCATC TATT TATT
1 TATT TATT TATT TAT-T TATT TATT TATT TATT TATT -T-ATT TATT TATT
* * * *
55101 TA-C TATT TATCT T-TT TATT TATT AATT TAGT TA-T TATC TATT TATT
1 TATT TATT TAT-T TATT TATT TATT TATT TATT TATT TATT TATT TATT
55147 TATT TATT
1 TATT TATT
55155 ATTATTTCTT
Statistics
Matches: 139, Mismatches: 34, Indels: 40
0.65 0.16 0.19
Matches are distributed among these distances:
3 26 0.19
4 99 0.71
5 8 0.06
6 6 0.04
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (4 bp):
TATT
Found at i:55242 original size:14 final size:15
Alignment explanation
Indices: 55225--55260 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
55215 TTATTTTTTT
55225 TTATTTTTTTTAAA-
1 TTATTTTTTTTAAAC
*
55239 TTATTCTTTTTAAAC
1 TTATTTTTTTTAAAC
55254 TTATTTT
1 TTATTTT
55261 CCTATTTATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (15 bp):
TTATTTTTTTTAAAC
Found at i:65732 original size:25 final size:25
Alignment explanation
Indices: 65687--65734 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
65677 TTTTGAACTC
*
65687 ATTATTTATTATTTAAAATATATTT
1 ATTATTTATTATATAAAATATATTT
*
65712 ATTATTTATT-TAATAATATATAT
1 ATTATTTATTAT-ATAAAATATAT
65735 CATATCTAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTATTTATTATATAAAATATATTT
Found at i:72255 original size:54 final size:54
Alignment explanation
Indices: 72169--72276 Score: 189
Period size: 54 Copynumber: 2.0 Consensus size: 54
72159 TTTCAAACCC
* *
72169 AAAATCCAAAATGTTACACGTCCTTTCGAACGAACTTCTGACGGTCCACACGAT
1 AAAATCCAAAATGTTACACGTCCTTTCAAACGAACTTCTGACGATCCACACGAT
*
72223 AAAATCCAAAATGTTACACGTCCTTTCAAACGAATTTCTGACGATCCACACGAT
1 AAAATCCAAAATGTTACACGTCCTTTCAAACGAACTTCTGACGATCCACACGAT
72277 CTATATATGA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.25
Consensus pattern (54 bp):
AAAATCCAAAATGTTACACGTCCTTTCAAACGAACTTCTGACGATCCACACGAT
Found at i:73679 original size:12 final size:12
Alignment explanation
Indices: 73662--73687 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
73652 ATATCTATAA
73662 TAATTAAAGTAT
1 TAATTAAAGTAT
73674 TAATTAAAGTAT
1 TAATTAAAGTAT
73686 TA
1 TA
73688 GTTGAATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (12 bp):
TAATTAAAGTAT
Found at i:75956 original size:330 final size:327
Alignment explanation
Indices: 75301--78039 Score: 2293
Period size: 329 Copynumber: 8.3 Consensus size: 327
75291 TTTTTAAGTA
* * *
75301 GAAATCAATTCGGAAAAAATAGGAAAATCGATATTAGAAGTGTGAAAAGCCCTTTAATCTTTTTG
1 GAAATTAATTCGG-AAAAATAGGAAAAT-GATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTG
* * * * * * *
75366 GCGTTAAATTATATATTTTTATGAGTATTGTGGCAAAAAATTCAGGAAGAATCTTTCAGGTAAAT
64 GCGTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGGAA-AAACTTTCGGGTCAAT
* * * * * * * *
75431 TTTTGCAAATTTTTAGTCGAAATCGTATACTAACCAGCACGGTTGTTGTCTAAAAACGTGTTCTG
128 TTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCG
** * * *
75496 -GACCCCAGTTCAGTTTTGCATGATTATTT-GCGCCGAGACTTCTTGAAATATCTATATTCATTT
193 AGACCTGA-CTCAGTTTTGCATGATT-TTTGGCGCCAAGACTCCTTGAAATATCTATATTCATTT
* * *
75559 AAT-CAAATCTCAGCCACATTGGATTTAAGGATTCGTTTTTATGAGCATCAGAATCATGTTTCGA
256 -ATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGA
75623 TTTAATCT
320 TTTAATCT
*
75631 GAAATTAATTCGGAAAAATAGGAAAAATGATAATAGAAGCGTGAAAAGCCCTTCAATCTTTTTGG
1 GAAATTAATTCGGAAAAATAGG-AAAATGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGG
* * *
75696 CATTGAATTATATATTTTTATGAGTATTTTGGCAAAAAATTAAGGAAAAAACTTTCGGGTCAATT
65 CGTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGG-AAAAACTTTCGGGTCAATT
* * * *
75761 TTTCCAAAATTTTAGCCGAAATCATGTACTAACCATCACAGATTTTGGCTAAAAACGCGTTCCGA
129 TTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCGA
** *
75826 GATCCTGACTCAGTTTTATATGATTTTTGGCGCCGAGACTCCTTGAAATATCTATATTCATTTAT
194 GA-CCTGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATTTAT
* * ** *
75891 CCAAATCTCAGCCACATTGGATTTAAGGATTTTTTTTTACAAGCATCTGAATCATGTTCCGATTT
258 CCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGATTT
*
75956 AATCA
323 AATCT
** * ** *
75961 GAAACAAATTCAGAAAAAATAAAAAAACCGATATTAGCAA-CGTGAAAAGCCCTTCAATCTTTTT
1 GAAATTAATTC-GGAAAAATAGGAAAA-TGATATTAG-AAGCGTGAAAAGCCCTTCAATCTTTTT
* * * * * *
76025 GGCGTTGAATTATATATTTTTATTATTAGTTTAGCCAAAAATCGAGG-AAAACTTTCAGGTCAAT
63 GGCGTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTTCGGGTCAAT
* * * * * *
76089 TTTTCCAAAATTTTAGTTGTAATCATGTACTAATCAT-ATCATGGGTTTTGGCTAAAAACGCGGT
128 TTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCA-CA--GTTTTTGGCTAAAAACGC-GT
* * * ** *
76153 CCGCGGCCCGACAGCCCGACTCAGTTTTGCATGATTTTTGGCGTAAAGACTCATTGAAATATCTA
189 ------TCCGAGA-CCTGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTA
* * *** * * *
76218 TATTCATCTGA-CCAAATATCAAAAATATTGGATTTAA-GATTTGTTTTTAAGAGCATCAAAAAC
247 TATTCAT-TTATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC-AAAAT
* *
76281 CA-GTTTTGATTTAAT-A
310 CATGTTTCGATTTAATCT
* * * * ** *
76297 AAAATTAATTCAGAAAAA-A-G---A-G---GTA-AATC--G---ATTCCTTCAATCTTTTTGGT
1 GAAATTAATTCGGAAAAATAGGAAAATGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGC
* * * * *
76347 GTTGACTTATATATTTTTTATTAGTATTTTAGCCAAAAATTAAGG-AAAACTTTCGGGTGAATTT
66 GTTGAATTATATA-TTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTTCGGGTCAATTT
* * * *
76411 TTCCAAAATTTTAGTCGTAATCGTGTACTAACCATCACCGTTTTTGGCTAAAAAACGCGGTCCAG
130 TTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCT-AAAAACGCGTTCC-G
* * * * * *** * *
76476 GGCCCCGGCTCAGTTTTGCATGATTTTTGGTGTTGATACTCCTTGAAATATTTATATTCATTTAA
193 AGACCTGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATTT-A
* * * * *
76541 T-CAAATCTCAGCCACATTGGATTTAAGGGTTTGGTTTTACGAGAATCTAAATTATGTTTCGATT
257 TCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGATT
*
76605 TAATCA
322 TAATCT
* * * **
76611 AAAATTAATAT-GGAAAAAATAGGGAAAACGATATTAGAAACGTGAAAAGCCCTTCAAAT-TCAT
1 GAAATTAAT-TCGG-AAAAATA-GGAAAATGATATTAGAAGCGTGAAAAGCCCTTC-AATCTTTT
* ** * * * ** *
76674 TGGCTTTGAATTATATATTTGTTATGAAAATTGTGGCCAAAAATTAAGGAAAAATTTTCCGCCTT
62 TGGCGTTGAATTATATATTT-TTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTT-CGGGTC
** * * *** *** *
76739 AGCTTTTGCAAAATTTTGGCCGAAATCGTGTACTAGTTATCACAGTTTTTAAATAAAAAGGCGTT
125 AATTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTT
* * * * * * *
76804 GCAGGGCCCTGACTCAGTTTTGCATGATTTTTTGCACCAAGACTCCTTGACATATCTATACTCAT
190 -CCGAGACCTGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCAT
* * ** * * **
76869 CTAACCAAATCTCAGTTACATTGGATTTAAGAATTTGTTTTTACGAGCATCAAAAACCGGTTTCG
254 TTATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCG
76934 ATTTAATCAT
319 ATTTAATC-T
*
76944 -AAATTAATTCGGAAATTAAAATAGGAATTACA-G-TATTTGAAGCGTGGAAAA-CCCTTCAATC
1 GAAATTAATTCGG--A--AAAATAGGAA--A-ATGATATTAGAAGCGT-GAAAAGCCCTTCAATC
* * **
77005 TTTTTGGCATTGAATTATATATATTTTTTATAAGTATTTTGGGTAAAAATTGAGGAAAAACTTTC
58 TTTTTGGCGTTGAA-T-TATATA-TTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTTC
* * * * * * * *
77070 GGGTTATTTTTTGCAGAATTTTAGCCGTAATCGTG---TAATCATCACGGTTTTGGGCTAAAAAC
120 GGGTCAATTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAAC
* * * * * * * *
77132 GCGTTCCGGGGACCAGGCTCAGTTTTACATGATTTTTTTGCGCAAAGACTCATTAAAATATCTAT
185 GCGTTCC-GAGACCTGACTCAGTTTTGCATGA-TTTTTGGCGCCAAGACTCCTTGAAATATCTAT
* * * * * ** *
77197 ATTCATATAACTAAATCTCAGGCACATTGTATTTAAAAATTTGTTTTTACGAGCAACAGAAATCA
248 ATTCATTTATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCA-AAATC-
77262 AT-TTT-GATTTAA-CT
311 ATGTTTCGATTTAATCT
** *
77276 AGAAATTAATTCGGAAAAATAGG-TTATCGATATTAGAAGCGTGAAAAACCCTTCAATCTTTTTG
1 -GAAATTAATTCGGAAAAATAGGAAAAT-GATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTG
* * * * * * * *
77340 GCGTTG-ATT-T-TTTTTTTCTAAGTATTGTGGCAAAAAATTGAGGAAAATCCTTCGGG-AAATT
64 GCGTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTTCGGGTCAATT
* * * * *
77401 TCTTGCAAAATTTTAGTCGAAATCGTGTATGTTA-CATCACGGTTTTTGGCTAAAAACACGTTCT
129 T-TTGCAAAATTTTAGTCGAAATCGTGTA-CTAACCATCACAGTTTTTGGCTAAAAACGCGTTCC
* * * * * **
77465 GAGGCCATGACTCAGTTTTACATGATTTTTTGCGCCGAGACTCCTTG-AATATATGCATTCATCT
192 GAGACC-TGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCAT-T
* * * * * * * *
77529 AAT-CAGATCTCAGCCACATTGGATTTAA-TATTTGTTTGTACGAGCGTCTAAATCGTATTTCGA
255 TATCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGA
77592 TTTAATCT
320 TTTAATCT
* * * * * * * * *
77600 GAAATTAATTCCGAAAAAAAAGAAAAATGATAATAAAAACGTGTAAAGCCCTCCAATCTTTTTGC
1 GAAATTAATT-CGGAAAAATAGGAAAATGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGG
* * *
77665 CGTTGAATTATATATTTTTATGAGTACTTTGGCCAAAAATTGAGGAAAAAAATTTCGAGTCAATT
65 CGTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGG-AAAAACTTTCGGGTCAATT
* *
77730 TCTGCAAAATTTCAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCGA
129 TTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCGA
* * * *** * * *
77795 GGTCCATG-CTAAGTTTTGTATGATTTTTAATGTCAAGACTCCTTGAAATATCTATATTTATCTA
194 -GACC-TGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATTTA
* ** * *
77859 ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTATGTCTCGATT
257 TCCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGATT
77924 TAAT-T
322 TAATCT
* * * * * *
77929 AGAAATTAATTCAGAAAAAATAGGAAATTGATTTTAGACGCGTGTAAAGCCCTTCAATATTTTTT
1 -GAAATTAATTC-GGAAAAATAGGAAAATGATATTAGAAGCGTGAAAAGCCCTTC-A-ATCTTTT
* * * * *
77994 TTGCGTTAAATTATATATTTTTTATTAGCATTTTAGCCAAAAATTG
62 TGGCGTTGAATTATATA-TTTTTATGAGTATTTTGGCCAAAAATTG
Statistics
Matches: 1949, Mismatches: 355, Indels: 207
0.78 0.14 0.08
Matches are distributed among these distances:
311 1 0.00
312 78 0.04
313 29 0.01
314 11 0.01
315 6 0.00
316 1 0.00
318 11 0.01
319 37 0.02
320 77 0.04
321 3 0.00
322 14 0.01
323 95 0.05
324 81 0.04
325 33 0.02
326 49 0.03
327 32 0.02
328 103 0.05
329 286 0.15
330 231 0.12
331 146 0.07
332 164 0.08
333 116 0.06
334 104 0.05
335 45 0.02
336 46 0.02
337 64 0.03
338 84 0.04
339 2 0.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (327 bp):
GAAATTAATTCGGAAAAATAGGAAAATGATATTAGAAGCGTGAAAAGCCCTTCAATCTTTTTGGC
GTTGAATTATATATTTTTATGAGTATTTTGGCCAAAAATTGAGGAAAAACTTTCGGGTCAATTTT
TGCAAAATTTTAGTCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTTCCGAGA
CCTGACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATTTATCCA
AATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCAAAATCATGTTTCGATTTAAT
CT
Done.