genome.fa.s16326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016326.1 Corchorus olitorius cultivar O-4 contig16359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163870

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55--1258	333	3.6	342	75	10	1263	33	13	17	35	1.89
5--4527	331	13.7	330	74	9	3301	32	14	16	36	1.89
2987--4544	333	4.7	328	79	5	1467	32	14	15	36	1.89
4823--4860	20	1.9	20	94	0	67	36	5	10	47	1.61
6804--6864	30	2.0	31	93	3	106	39	14	18	27	1.90
9957--9985	1	29.0	1	100	0	58	100	0	0	0	0.00
26237--26273	16	2.3	16	100	0	74	35	5	21	37	1.77
26295--26337	13	3.3	13	93	0	77	48	11	0	39	1.40
30808--30862	28	2.0	29	82	13	71	41	5	5	47	1.49
39931--39959	2	14.5	2	100	0	58	51	0	0	48	1.00
53469--53636	84	2.0	84	92	0	282	20	27	15	36	1.93
54024--54338	156	2.0	156	96	0	576	26	28	13	31	1.94
62260--62290	7	4.6	7	92	8	55	0	32	0	67	0.91
62251--62290	20	2.1	19	90	4	62	0	30	0	70	0.88
67951--67981	15	2.1	15	100	0	62	61	12	6	19	1.53
76133--76201	36	1.9	36	90	0	111	40	33	17	8	1.80
76237--76266	13	2.3	13	100	0	60	36	43	0	20	1.52
84994--85062	21	3.3	21	72	22	72	11	17	59	11	1.61
84994--85080	42	2.1	42	89	4	131	11	17	59	11	1.60
85002--85076	21	3.8	18	69	19	51	12	16	61	10	1.57
127830--127867	19	2.0	20	89	5	60	50	18	0	31	1.47
132317--132353	15	2.4	15	86	4	56	40	10	0	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135248--135456	104	2.0	104	96	0	382	28	20	22	29	1.98
139134--139181	24	2.0	25	95	4	89	54	10	22	12	1.68
156730--156754	2	12.5	2	100	0	50	52	0	0	48	1.00
159028--159982	321	3.0	320	82	3	1100	35	17	15	32	1.91
160354--161435	332	3.3	327	79	7	1107	35	16	14	33	1.89
161157--161720	284	2.0	287	83	6	732	36	17	15	31	1.91
162501--163870	333	4.1	331	92	1	2287	34	16	16	32	1.91

Tables:   1

The End!