Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016328.1 Corchorus olitorius cultivar O-4 contig16361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98833

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1871--1937
21
3.2
21
93
0
116
11
16
35
35
1.86
3531--3571
19
2.2
19
86
0
55
29
4
21
43
1.73
15612--15639
13
2.2
13
100
0
56
28
0
7
64
1.20
16279--16305
4
6.8
4
100
0
54
48
0
0
51
1.00
21469--21512
20
2.1
22
87
8
65
56
4
34
4
1.40
31908--31941
2
17.0
2
100
0
68
50
0
50
0
1.00
32026--32240
110
2.0
109
92
0
358
37
19
13
29
1.90
32403--32624
110
2.0
110
100
0
444
36
18
10
33
1.86
36296--36371
29
2.6
29
100
0
152
51
13
11
23
1.74
44299--44353
24
2.3
24
84
6
67
29
3
29
38
1.74
52592--52619
1
28.0
1
100
0
56
100
0
0
0
0.00
79612--79649
15
2.5
16
83
12
53
0
39
0
60
0.97
85416--85508
46
2.0
46
95
0
168
19
15
25
39
1.90
97374--98826
616
2.4
612
81
5
1773
32
14
18
34
1.91

Tables:   1

The End!