Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016331.1 Corchorus olitorius cultivar O-4 contig16364, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72263

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61--1286
331
3.8
320
80
8
1182
35
16
14
33
1.90
1044--1535
260
1.9
264
80
8
588
39
15
12
33
1.84
687--2453
589
3.0
576
79
8
1866
36
16
14
32
1.89
15105--15137
2
16.5
2
100
0
66
0
48
0
51
1.00
16608--16646
6
6.3
6
88
5
60
48
12
15
23
1.79
19112--19156
22
2.1
22
87
4
65
42
2
31
24
1.67
19563--19592
15
2.1
15
93
6
53
50
23
20
6
1.71
25289--25354
31
2.3
30
85
12
86
21
6
24
48
1.72
32485--32551
33
2.0
33
88
5
100
8
28
19
43
1.81
36119--36157
2
19.5
2
100
0
78
48
0
0
51
1.00
36810--36841
1
32.0
1
100
0
64
0
0
0
100
0.00
46276--46400
63
2.0
63
85
3
171
22
31
12
33
1.92
46585--46648
33
1.9
33
90
0
101
7
29
18
43
1.78
46678--46729
27
1.9
27
92
0
86
15
42
15
26
1.87
47606--47717
54
2.1
54
98
0
215
19
36
7
36
1.79
61383--61453
36
2.0
36
100
0
142
23
22
19
33
1.97
62730--62867
69
2.0
69
100
0
276
46
17
15
20
1.84
64005--64054
25
2.0
26
88
4
75
50
16
10
24
1.75
65452--65501
20
2.4
22
83
9
70
42
0
6
52
1.26
66059--66218
80
2.0
80
91
0
257
23
31
12
33
1.92
69067--69166
50
2.0
51
90
7
159
42
9
20
29
1.82

Tables:   1

The End!