Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016334.1 Corchorus olitorius cultivar O-4 contig16367, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33490

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1186--1214
15
1.9
15
100
0
58
24
6
27
41
1.80
1492--1535
21
2.0
23
91
8
74
31
2
4
61
1.28
3549--3583
5
7.0
5
93
0
61
57
0
42
0
0.99
4488--4530
2
22.0
2
90
4
70
53
0
0
46
1.00
5095--5120
13
2.0
13
100
0
52
38
23
23
15
1.92
5142--5272
65
2.0
64
89
1
199
51
14
17
16
1.77
6106--6143
20
1.9
20
89
10
60
39
0
0
60
0.97
7707--7739
17
1.9
17
100
0
66
33
6
24
36
1.80
26048--26143
48
2.0
48
97
0
183
22
32
18
26
1.97
32950--32991
10
4.6
9
86
13
59
42
0
0
57
0.99
32756--33185
224
1.9
224
95
1
774
37
12
4
45
1.62

Tables:   1

The End!