Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016337.1 Corchorus olitorius cultivar O-4 contig16370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12215
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Found at i:823 original size:20 final size:18
Alignment explanation
Indices: 795--834 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
785 TTATATTAAT
795 TTATAATATTATGATAGTTA
1 TTATAATATT-TGAT-GTTA
*
815 TTATCATATTTGATGTTA
1 TTATAATATTTGATGTTA
833 TT
1 TT
835 TCTAAGGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.55
Consensus pattern (18 bp):
TTATAATATTTGATGTTA
Found at i:1910 original size:15 final size:14
Alignment explanation
Indices: 1890--1922 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
1880 TTTACACACA
1890 AAAAAAAGAAAAAAG
1 AAAAAAAG-AAAAAG
1905 AAAAAAAGAAAAAG
1 AAAAAAAGAAAAAG
1919 AAAA
1 AAAA
1923 GATAGGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAG
Found at i:2458 original size:20 final size:20
Alignment explanation
Indices: 2433--2492 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
2423 TAATTTGTTT
2433 GTTTATTTGGTAGGTATATA
1 GTTTATTTGGTAGGTATATA
2453 GTTTA--T--T---TA-ATA
1 GTTTATTTGGTAGGTATATA
2465 GTTTATTTGGTAGGTATATA
1 GTTTATTTGGTAGGTATATA
2485 GTTTATTT
1 GTTTATTT
2493 ATGATATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 16
0.67 0.00 0.33
Matches are distributed among these distances:
12 8 0.25
13 2 0.06
14 1 0.03
16 2 0.06
18 1 0.03
19 2 0.06
20 16 0.50
ACGTcount: A:0.25, C:0.00, G:0.20, T:0.55
Consensus pattern (20 bp):
GTTTATTTGGTAGGTATATA
Found at i:2504 original size:36 final size:32
Alignment explanation
Indices: 2433--2493 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
2423 TAATTTGTTT
2433 GTTTATTTGGTAGGTATATAGTTTATTTAATA
1 GTTTATTTGGTAGGTATATAGTTTATTTAATA
2465 GTTTATTTGGTAGGTATATAGTTTATTTA
1 GTTTATTTGGTAGGTATATAGTTTATTTA
2494 TGATATAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.26, C:0.00, G:0.20, T:0.54
Consensus pattern (32 bp):
GTTTATTTGGTAGGTATATAGTTTATTTAATA
Found at i:2582 original size:30 final size:30
Alignment explanation
Indices: 2546--2606 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
2536 TGGGTATAGA
2546 GATTTATTTGAATTGTAATGAGATTTAACT
1 GATTTATTTGAATTGTAATGAGATTTAACT
2576 GATTTATTTGAATTGTAATGAGATTTAACT
1 GATTTATTTGAATTGTAATGAGATTTAACT
2606 G
1 G
2607 GGTTCGTTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (30 bp):
GATTTATTTGAATTGTAATGAGATTTAACT
Found at i:2965 original size:121 final size:112
Alignment explanation
Indices: 2732--2965 Score: 378
Period size: 121 Copynumber: 2.0 Consensus size: 112
2722 GAAATGAAAA
2732 TGATTCTTATCTAAAAAAAAAATAAAATTAGTCATATTATTTACAATTTTGTCATTAATGAACTT
1 TGATTCTTATCTAAAAAAAAAATAAAATTAGTCATATTATTTACAATTTTGTCATTAATGAACTT
*
2797 ATTTCTTTCTAATTTTCATTGTTCCTACCAAACGTAAAATAGAAGTG
66 ATTTCTTTCTAATTTTCATCGTTCCTACCAAACGTAAAATAGAAGTG
2844 TGATTCTTATCTCAAAAAAAAAATAAAATTAGTCATATTATTTACAATTTTGTCATTAATGAACT
1 TGATTCTTATCT-AAAAAAAAAATAAAATTAGTCATATTATTTACAATTTTGTCA-T--T--A--
2909 TATGAACTTATTTCTTTCTAATTTTCATCGTTCCTACCAAACGTAAAATAGAAGTG
58 -ATGAACTTATTTCTTTCTAATTTTCATCGTTCCTACCAAACGTAAAATAGAAGTG
2965 T
1 T
2966 AACTCTCTTT
Statistics
Matches: 112, Mismatches: 1, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
112 12 0.11
113 42 0.38
114 1 0.01
116 1 0.01
118 1 0.01
121 55 0.49
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (112 bp):
TGATTCTTATCTAAAAAAAAAATAAAATTAGTCATATTATTTACAATTTTGTCATTAATGAACTT
ATTTCTTTCTAATTTTCATCGTTCCTACCAAACGTAAAATAGAAGTG
Found at i:3015 original size:17 final size:16
Alignment explanation
Indices: 2973--3016 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 16
2963 TGTAACTCTC
2973 TTTTCTCTTCCTTCCTA
1 TTTTCT-TTCCTTCCTA
2990 -TTTCATTTCCTTCCTTA
1 TTTTC-TTTCCTTCC-TA
3007 TTTTCTTTCC
1 TTTTCTTTCC
3017 ATACCATTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 12 0.50
17 8 0.33
18 4 0.17
ACGTcount: A:0.07, C:0.32, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTCTTTCCTTCCTA
Found at i:3054 original size:27 final size:27
Alignment explanation
Indices: 3022--3075 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
3012 TTTCCATACC
3022 ATTTCTTTATTTCCTACCAAAAATAGT
1 ATTTCTTTATTTCCTACCAAAAATAGT
*
3049 ATTTCTTTATTTCCTACCAAACATAGT
1 ATTTCTTTATTTCCTACCAAAAATAGT
3076 GTGATTGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.04, T:0.44
Consensus pattern (27 bp):
ATTTCTTTATTTCCTACCAAAAATAGT
Found at i:4567 original size:70 final size:70
Alignment explanation
Indices: 4454--4589 Score: 272
Period size: 70 Copynumber: 1.9 Consensus size: 70
4444 TAGCAGTAAA
4454 CAATCTTAACTTCAGTATACTATAAAAACCAGGGTTTAATTAGTAGACTTCTTAATAGAAAAGAA
1 CAATCTTAACTTCAGTATACTATAAAAACCAGGGTTTAATTAGTAGACTTCTTAATAGAAAAGAA
4519 AGGAG
66 AGGAG
4524 CAATCTTAACTTCAGTATACTATAAAAACCAGGGTTTAATTAGTAGACTTCTTAATAGAAAAGAA
1 CAATCTTAACTTCAGTATACTATAAAAACCAGGGTTTAATTAGTAGACTTCTTAATAGAAAAGAA
4589 A
66 A
4590 AACAAAAATT
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.29
Consensus pattern (70 bp):
CAATCTTAACTTCAGTATACTATAAAAACCAGGGTTTAATTAGTAGACTTCTTAATAGAAAAGAA
AGGAG
Found at i:5218 original size:20 final size:20
Alignment explanation
Indices: 5193--5250 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
5183 TATAAGAATT
5193 TAAATCCAAGTAATGAAAAA
1 TAAATCCAAGTAATGAAAAA
* **
5213 TAAAT-CTA--AATG--ATT
1 TAAATCCAAGTAATGAAAAA
5228 TAAATCCAAGTAATGAAAAA
1 TAAATCCAAGTAATGAAAAA
5248 TAA
1 TAA
5251 GTCTAAATGA
Statistics
Matches: 27, Mismatches: 6, Indels: 10
0.63 0.14 0.23
Matches are distributed among these distances:
15 6 0.22
16 2 0.07
17 4 0.15
18 4 0.15
19 2 0.07
20 9 0.33
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.26
Consensus pattern (20 bp):
TAAATCCAAGTAATGAAAAA
Found at i:5229 original size:35 final size:35
Alignment explanation
Indices: 5190--5262 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
5180 AATTATAAGA
5190 ATTTAAATCCAAGTAATGAAAAATAAATCTAAATG
1 ATTTAAATCCAAGTAATGAAAAATAAATCTAAATG
*
5225 ATTTAAATCCAAGTAATGAAAAATAAGTCTAAATG
1 ATTTAAATCCAAGTAATGAAAAATAAATCTAAATG
5260 ATT
1 ATT
5263 AATTAAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.52, C:0.08, G:0.10, T:0.30
Consensus pattern (35 bp):
ATTTAAATCCAAGTAATGAAAAATAAATCTAAATG
Found at i:9136 original size:2 final size:2
Alignment explanation
Indices: 9129--9155 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9119 GGATCTTGGA
9129 CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT C
9156 ATTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:9763 original size:13 final size:13
Alignment explanation
Indices: 9745--9772 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9735 AATGACAAAT
9745 TATGTAGTATTAA
1 TATGTAGTATTAA
9758 TATGTAGTATTAA
1 TATGTAGTATTAA
9771 TA
1 TA
9773 GAATAAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (13 bp):
TATGTAGTATTAA
Found at i:11115 original size:40 final size:40
Alignment explanation
Indices: 11056--11132 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
11046 CGAATTATAT
* * *
11056 ATATTCTATAAGTGTTTTGGGAAAAGATTGTGGAAAATAC
1 ATATTCTATAAGCGATTTGGCAAAAGATTGTGGAAAATAC
* *
11096 ATATTCTATTAGCGATTTGGCCAAAGATTGTGGAAAA
1 ATATTCTATAAGCGATTTGGCAAAAGATTGTGGAAAA
11133 ATCTTTCGGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (40 bp):
ATATTCTATAAGCGATTTGGCAAAAGATTGTGGAAAATAC
Found at i:11408 original size:373 final size:375
Alignment explanation
Indices: 10720--11469 Score: 1123
Period size: 373 Copynumber: 2.0 Consensus size: 375
10710 CCCTATATAT
* * *
10720 ATATTCTATAAGTGTTTTGGCCAAAGATTTTGGAAATAACTTTCAGGTCAATTTTTGCAAAACTT
1 ATATTCTATAAGCGATTTGGCCAAAGATTGTGGAAATAACTTTCAGGTCAATTTTTGCAAAACTT
* * * *
10785 TAGCCGAAATCATGTACTAACCATCACGGTTTTTTTTGGCTAAAAACGCGTTATGGTGCCCCGAC
66 TAGCAGAAATCATGTACTAACCATCACGG--TGTTTTGGCTAAAAACGCGTTACGGGGCCCCGAC
* * *
10850 TAAGTTTTTAATGATTTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCGAATCTC
129 TAAGTTTTTAATGATTTATGGCCACGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTC
* * *
10915 AACCAAAACGGATTTAAGGATTTGATTTTACGGGCATCAGAATCATGTTTCAATTTAATCAGAAA
194 AACCAAAACGAATTTAAGGATTTGATTTTACGAGCATCAAAATCATGTTTCAATTTAATCAGAAA
* * * * *
10980 TTAATTTGGAAAGATATAGGAAAATCGATATTAGAAGCGTGGAAATCCTTTCAATCTTTTTGGCG
259 TTAATTCGGAAACATATAGGAAAATCGATATTAGAAACGTGAAAAGCCTTTCAATCTTTTTGGCG
* *
11045 TCGAATTATATATATTCTATAAGTG-TTTTGGGAAAAGATTGTGGAAAATAC
324 TCGAATTATATATATACTATAAGTGATTTTGGCAAAAGATTGTGGAAAATAC
* *
11096 ATATTCTATTAGCGATTTGGCCAAAGATTGTGGAAA-AATCTTTCGGGTCAATTTTTGCAAAA-T
1 ATATTCTATAAGCGATTTGGCCAAAGATTGTGGAAATAA-CTTTCAGGTCAATTTTTGCAAAACT
* *
11159 ATTAGCAGAAATCATGTACTAACTATCACGG-GTTTTGGCTAAAAACGCGTTCCGGGGCCCCGAC
65 -TTAGCAGAAATCATGTACTAACCATCACGGTGTTTTGGCTAAAAACGCGTTACGGGGCCCCGAC
* *
11223 TCAGTTTTTAATGATTTATGTCCACGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTC
129 TAAGTTTTTAATGATTTATGGCCACGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTC
* ** * *
11288 ATCCAAATTGAATTTAAGGATTTGATTTTACGAGCCTCAAAATCATGTTTCCATTTAATCAGAAA
194 AACCAAAACGAATTTAAGGATTTGATTTTACGAGCATCAAAATCATGTTTCAATTTAATCAGAAA
11353 TTAATTCGGAAACATATAGGAAAATCGATATTAGAAACGTGAAAAAGCC-TTCAATCTTTTTGGC
259 TTAATTCGGAAACATATAGGAAAATCGATATTAGAAACGTG-AAAAGCCTTTCAATCTTTTTGGC
* *
11417 GTTGAATTATATATATACTATAAGTGATTTTGGCCAAAGATTGTGGAAAATAC
323 GTCGAATTATATATATACTATAAGTGATTTTGGCAAAAGATTGTGGAAAATAC
11470 TTTCGGGTCA
Statistics
Matches: 337, Mismatches: 33, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
373 223 0.66
374 29 0.09
375 3 0.01
376 82 0.24
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (375 bp):
ATATTCTATAAGCGATTTGGCCAAAGATTGTGGAAATAACTTTCAGGTCAATTTTTGCAAAACTT
TAGCAGAAATCATGTACTAACCATCACGGTGTTTTGGCTAAAAACGCGTTACGGGGCCCCGACTA
AGTTTTTAATGATTTATGGCCACGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAA
CCAAAACGAATTTAAGGATTTGATTTTACGAGCATCAAAATCATGTTTCAATTTAATCAGAAATT
AATTCGGAAACATATAGGAAAATCGATATTAGAAACGTGAAAAGCCTTTCAATCTTTTTGGCGTC
GAATTATATATATACTATAAGTGATTTTGGCAAAAGATTGTGGAAAATAC
Found at i:11722 original size:336 final size:333
Alignment explanation
Indices: 11111--12192 Score: 1596
Period size: 334 Copynumber: 3.3 Consensus size: 333
11101 CTATTAGCGA
* *
11111 TTTGGCCAAAGATTGTGG-AAAAATCTTTCGGGTCAATTTTTGCAAAATATTAGCAGAAATCATG
1 TTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
* * * * *
11175 TACTAACTATCACGG-GTTTTGGCTAAAAACGCGTTCCGGGGCCCCGACTCAGTTTTTAATGATT
66 TACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCAGGGG-CCCGGCTCAGTTTTCAATGATT
* * * * *
11239 TATGTCCACGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCATCCAAATTGAATTTA
130 TTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTA
* * * *
11304 AGGATTTGATTTTACGAGCCTCAAAATCATGTTTCCATTTAATCAGAAATTAATTCGGAAACATA
195 AGGATTTGATTTTACGAGCATCAGAATCAAGTTTCGATTTAATCAGAAATTAATTCGGAAACATA
11369 TAGGAAAATCGATATTAGAAACGTGAAAAAGCCTTCAATCTTTTTGGCGTTGAATTATATATATA
260 TAGGAAAATCGATATTAGAAACGTGAAAAA-CCTTCAATCTTTTTGGCGTTGAATTATATATATA
11434 CTATAAGTGAT
324 CTATAAGTG-T
* *
11445 TTTGGCCAAAGATTGTGGAAAATA-CTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTG
1 TTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
* * *
11509 TACTAACCATCACGGTTTTTTTGGCTAAAAACGCGTTCAGGGGTCCCGGCTCAGTCTCCAAAGAT
66 TACTAACCATCACGG-TTTTTTGGCTAAAAACGCGTTCAGGGG-CCCGGCTCAGTTTTCAATGAT
11574 TTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTT
129 TTTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTT
11639 AAGGATTTGATTTTACGAGCATCAGAATCAAGTTTCGATTTAATCAGAAATTAATTCGGAAACAT
194 AAGGATTTGATTTTACGAGCATCAGAATCAAGTTTCGATTTAATCAGAAATTAATTCGGAAACAT
* * * *
11704 ATAGGAAAATCGATATTAGAAGCGTGAAAAATCCTTCAATCTTCTTGGCGTTGAATTAT-TCTTT
259 ATAGGAAAATCGATATTAGAAACGTGAAAAA-CCTTCAATCTTTTTGGCGTTGAATTATATATAT
*
11768 CCTATAAGTGT
323 ACTATAAGTGT
* * * *
11779 TTTCGCCAAAGATTATGGAAAAAATCTTTCGGGTCAATTTTTACAAAATTTTAGCCGAAATCGTG
1 TTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
*
11844 TACTAACCATCACAGTTTTTTGGCTAAAAACGCGTTCAGGGGCCACGGCTCAGTTTTCAATGATT
66 TACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCAGGGGCC-CGGCTCAGTTTTCAATGATT
* *
11909 TTTGGCCCAGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCTGCCAAATTGGATTTA
130 TTTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTA
*
11974 AGGATTTGATTTTACGAGCATCAGAATTAAGTTTCGATTTAATCAGAAATTAATTCGGAAACATA
195 AGGATTTGATTTTACGAGCATCAGAATCAAGTTTCGATTTAATCAGAAATTAATTCGGAAACATA
* * * * * * *
12039 TAGGAAAATCTATATTAGAAACGTGAAAAACC--CTATATATAT----AT--ATATATATATATT
260 TAGGAAAATCGATATTAGAAACGTGAAAAACCTTCAATCTTTTTGGCGTTGAAT-TATATATATA
12096 CTATAAGTGT
324 CTATAAGTGT
* *
12106 TTTGGCCAAAGATTGTGGAAAAAA-CTTTCAGGTCTAATTTTTGCAAAAACTTTAGCCGAAATCA
1 TTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTC-AATTTTTGC-AAAATTTTAGCCGAAATCA
12170 TGTACTAACCATCACGGTTTTTT
64 TGTACTAACCATCACGGTTTTTT
12193 TTTGGTCTAA
Statistics
Matches: 682, Mismatches: 57, Indels: 24
0.89 0.07 0.03
Matches are distributed among these distances:
325 2 0.00
326 12 0.02
327 44 0.06
328 39 0.06
331 5 0.01
333 4 0.01
334 290 0.43
335 69 0.10
336 217 0.32
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (333 bp):
TTTGGCCAAAGATTGTGGAAAAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCATG
TACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTCAGGGGCCCGGCTCAGTTTTCAATGATTT
TTGGCCCCGAGACTCCTTGACATATCTATATTCATCTAACCAAATCTCAGCCAAATTGGATTTAA
GGATTTGATTTTACGAGCATCAGAATCAAGTTTCGATTTAATCAGAAATTAATTCGGAAACATAT
AGGAAAATCGATATTAGAAACGTGAAAAACCTTCAATCTTTTTGGCGTTGAATTATATATATACT
ATAAGTGT
Done.