Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016338.1 Corchorus olitorius cultivar O-4 contig16371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103062

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
351--743
205
1.9
206
92
0
653
36
11
17
35
1.86
1352--1428
40
1.9
40
89
0
118
35
10
20
33
1.87
535--4658
333
12.4
332
81
8
4587
31
16
17
34
1.92
535--4658
667
6.2
665
84
6
4961
31
16
17
34
1.92
1451--4658
989
3.3
984
86
3
4375
31
16
17
34
1.92
17905--17953
1
49.0
1
91
0
80
95
4
0
0
0.25
17972--18002
6
5.2
6
100
0
62
67
32
0
0
0.91
17943--18002
12
5.1
12
82
15
56
70
30
0
0
0.88
17945--18002
18
3.2
17
81
15
64
70
29
0
0
0.87
18981--19088
29
3.8
29
91
2
182
16
23
10
50
1.76
19688--19716
9
3.2
9
100
0
58
68
20
10
0
1.18
25955--25991
7
5.6
7
93
3
51
78
0
2
18
0.87
59980--60030
17
3.2
17
73
21
65
27
9
11
50
1.70
59991--60039
13
3.5
13
75
20
53
26
10
8
55
1.61
59980--60039
30
2.0
30
100
0
120
26
10
10
53
1.66
66214--66246
17
1.9
17
93
0
57
51
9
3
36
1.49
70921--70955
2
17.5
2
100
0
70
48
0
0
51
1.00
87016--87050
18
1.9
18
100
0
70
34
17
20
28
1.95
92374--92439
30
2.2
30
86
7
91
36
10
9
43
1.71
95380--95449
36
1.9
36
85
0
95
20
8
10
61
1.53
96277--96323
25
1.9
25
95
4
87
55
8
6
29
1.55
96314--96394
39
2.0
40
90
2
128
38
3
7
50
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96610--96640
2
15.0
2
93
6
53
48
0
3
48
1.17

Tables:   1

The End!