Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016339.1 Corchorus olitorius cultivar O-4 contig16372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23876

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
862--888
2
13.5
2
100
0
54
48
0
0
51
1.00
3666--3700
11
3.2
11
84
15
54
11
5
0
82
0.82
12053--12110
27
2.1
27
84
6
73
24
8
5
62
1.45
12216--12245
15
1.9
16
93
6
53
43
0
3
53
1.17
13845--17020
333
9.5
330
82
5
2916
33
15
15
36
1.88
13845--17020
665
4.7
661
80
6
2834
33
15
15
36
1.88
16815--17237
216
2.0
216
81
6
509
32
13
13
40
1.83
17637--17665
2
14.5
2
100
0
58
48
0
0
51
1.00
20857--20907
26
2.0
25
96
3
93
31
11
5
50
1.62
22409--22438
16
1.9
16
93
6
53
53
13
3
30
1.56

Tables:   1

The End!