Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016340.1 Corchorus olitorius cultivar O-4 contig16373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96942

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116--175
30
2.0
30
84
9
79
51
8
1
38
1.42
645--686
21
2.0
21
100
0
84
42
28
4
23
1.74
6594--6625
15
2.1
15
94
0
55
40
12
21
25
1.88
12126--12160
7
5.0
7
85
0
52
31
31
25
11
1.91
21878--21910
17
2.0
17
88
5
50
24
6
3
66
1.28
30368--30899
284
1.9
280
83
3
692
37
16
11
34
1.85
31756--31780
2
12.5
2
100
0
50
52
0
0
48
1.00
31772--32293
289
1.8
286
84
7
716
36
15
15
32
1.89
32029--34186
330
6.6
330
75
10
1653
36
14
14
34
1.87
34746--34771
5
5.2
5
100
0
52
57
0
19
23
1.40
64971--65042
24
3.0
24
95
0
126
33
23
19
23
1.97
73758--73787
15
2.0
15
93
0
51
70
0
10
20
1.16
73758--73786
14
2.0
15
93
6
51
68
0
10
20
1.18
74048--74097
22
2.3
22
85
0
64
34
12
10
44
1.75
74420--74744
164
2.0
164
84
3
429
37
14
12
35
1.84
74580--76505
331
5.8
329
78
7
1797
33
14
16
36
1.88
74580--76505
337
5.8
329
79
7
1865
33
14
16
36
1.88
89805--89851
24
2.1
22
88
11
69
31
25
12
29
1.93
92457--92515
30
1.9
31
93
3
102
49
3
22
25
1.65
94227--94274
15
2.9
16
84
12
53
41
4
2
52
1.32
94224--94274
18
2.8
17
85
8
57
41
3
1
52
1.31
95653--95694
22
1.9
22
85
0
57
40
11
4
42
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96137--96218
22
3.7
22
98
0
155
23
45
28
3
1.70

Tables:   1

The End!