Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016341.1 Corchorus olitorius cultivar O-4 contig16374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53139
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Found at i:43413 original size:270 final size:269
Alignment explanation
Indices: 42908--43446 Score: 755
Period size: 270 Copynumber: 2.0 Consensus size: 269
42898 CGCGTTCCGG
* * * *
42908 AGCCCCGACTCAGTTTTGCATTATTTTTGGTGTAAAGATTTCTTGAACTATCATATTCATCGAAG
1 AGCCCCGACTCAGTTTTGCATGATTTTTGGCGTAAAGATCTCTTGAAATATCATATTCATCGAAG
** *
42973 CAAATCCCAACCACATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATGTA
66 CAAATCCCAACCACATTCAATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATGTA
* * *
43038 ATTAGAAATTAATTCGGAAGAAAAAAGGAAAACCGATATTAAAAGTGTGCAAACCCTTCAATCTT
131 ATTAGAAATTAATTCGGAAGAAAAAAGGAAAAACGATATCAAAAGTGTGAAAACCCTTCAATCTT
* * * *
43103 TTTGGCGTTGAGTTATATATTTTTTATGAGTGTCGTGGCAAAAAATTGA-GAAAAGATTTTTTGG
196 TTTGGCGATGAATTATATATTTTTTATGAGTCTCGTGGCAAAAAATTGAGGAAAA-ATTTTTCGG
43167 GTCAGTTTTT
260 GTCAGTTTTT
*
43177 AGCCCCGACTTAGTTTTGCATGATTTTTGGCGTAAAGA-CTCATTGAAATATCTATATTCATCGA
1 AGCCCCGACTCAGTTTTGCATGATTTTTGGCGTAAAGATCTC-TTGAAATATC-ATATTCATCGA
* * * * * *
43241 ATCTAATCCCAGCCACATTCAATTTAAGGATTTGTTTTTATGAGCATCTGAATCTTGTTTCAATT
64 AGCAAATCCCAACCACATTCAATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATG
* *
43306 TAATTAGAAATTAATTCGG-A-AAAAATGGAAAAACGATATCAGAAGTGTGAAAAACCCTTCAAT
129 TAATTAGAAATTAATTCGGAAGAAAAAAGGAAAAACGATATCAAAAGTGTG-AAAACCCTTCAAT
* * *
43369 CTTTTTTGCGATGAATTATATATTTTTTTTTGAGTACT-GTGGCAAAGAATTGAGGAAAAATTTT
193 CTTTTTGGCGATGAATTATATA-TTTTTTATGAGT-CTCGTGGCAAAAAATTGAGGAAAAATTTT
43433 TCGGGTCAGTTTTT
256 TCGGGTCAGTTTTT
43447 TGCAAAATTT
Statistics
Matches: 238, Mismatches: 26, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
268 27 0.11
269 76 0.32
270 129 0.54
271 6 0.03
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (269 bp):
AGCCCCGACTCAGTTTTGCATGATTTTTGGCGTAAAGATCTCTTGAAATATCATATTCATCGAAG
CAAATCCCAACCACATTCAATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATGTA
ATTAGAAATTAATTCGGAAGAAAAAAGGAAAAACGATATCAAAAGTGTGAAAACCCTTCAATCTT
TTTGGCGATGAATTATATATTTTTTATGAGTCTCGTGGCAAAAAATTGAGGAAAAATTTTTCGGG
TCAGTTTTT
Found at i:43701 original size:600 final size:589
Alignment explanation
Indices: 42597--43733 Score: 1475
Period size: 600 Copynumber: 1.9 Consensus size: 589
42587 GCCTCGGCTA
* * * **
42597 AGTTTTGCATGATTTTTGGCGCTGAAACTCCTTGAAATATCTATATTCATCTAATAAAATCTTAG
1 AGTTTTGCATGATTTTTGGCGCTAAAACTCATTGAAATATCTATATTCATCGAATAAAATCCCAG
* * *
42662 CTACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGTGTTTCGATTTAATTAGAAATTAATTT
66 CCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGTGTTTCAATTTAATTAGAAATTAATTC
* * * *
42727 AGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAGACCCTTCAATTTTTTTGGTGTTGAATTAT
131 AGAAAAAAAGGAAAAACGATATCAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGATGAATTAT
* * * * *
42792 ATATTTTTCTAAGTATTGTGGCATAAATAAATAAAAACTTTTCTGGTCAGCTTTGGCGAAATTTT
196 ATATTTTTCTAAGTACTGTGGCAAAAATAAAGAAAAACTTTTCGGGTCAGCTTTGGCAAAATTTT
*
42857 AGCCGAAATCGTGTACTAACCATCATGGTTTTTTGCTAAAACGCGTTCCGGAGCCCCGACTCAGT
261 AGCCGAAATCGTGTAC-AACCATCATGGTTTTTTGCTAAAACACGTTCCGGAGCCCCGACTCAGT
* * * * * * * *
42922 TTTGCATTATTTTTGGTGTAAAGATTTCTTGAACTATCATATTCATCGAAGCAAATCCCAACCAC
325 TTTGCATGATTTTTGGCGTAAAGAATCCGTGAAATATCATATTCATCGAACCAAATACCAACCAC
* *
42987 ATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATGTAATTAGAAATTAATT
390 ATTCGATTTAAGAATTTGTTTTTACGAGCACCTGAATCTTGTTTCGATGTAATTAGAAATTAATT
** * * *
43052 CGGAAGAAAAAAGGAAAACCGATATTAAAAGTGTGCAAACCCTTCAATCTTTTTGGCGTTGAGTT
455 C-GAAGAAAAAAGGAAAAAAGATATTAAAAGCGTGAAAACCCTTCAATCTTTTTGGCGTTGAATT
43117 ATATATTTTTTATGAGTGTCGTGGCAAAAAATTGAGAAAAGATTTTTTGGGTCAGTTTTTAGCCC
519 ATATATTTTTTATGAGTGTCGTGGCAAAAAATTGAGAAAAGATTTTTTGGGTCAGTTTTTAGCCC
43182 CGACTT
584 CGACTT
**
43188 AGTTTTGCATGATTTTTGGCG-TAAAGACTCATTGAAATATCTATATTCATCGAATCTAATCCCA
1 AGTTTTGCATGATTTTTGGCGCTAAA-ACTCATTGAAATATCTATATTCATCGAATAAAATCCCA
*
43252 GCCACATT-CAATTTAAGGATTTGTTTTTATGAGCATCTGAATCTTGTTTCAATTTAATTAGAAA
65 GCCACATTGC-ATTTAAGGATTTGTTTTTACGAGCATCTG-----TGTTTCAATTTAATTAGAAA
* * *
43316 TTAATTCGGAAAAAATGGAAAAACGATATCAGAAGTGTGAAAAACCCTTCAATCTTTTTT-GCGA
124 TTAATTCAGAAAAAAAGGAAAAACGATATCAGAAGCGTGAAAAACCCTTCAAT-TTTTTTGGCGA
* * * * * *
43380 TGAATTATATATTTTTTTTTGAGTACTGTGGCAAAGAATTGAGGAAAAATTTTTCGGGTCAGTTT
188 TGAATTATATA--TTTTTCTAAGTACTGTGGCAAA-AA-TAAAGAAAAACTTTTCGGGTCAG-CT
* * * * * *
43445 TTTGCAAAATTTTAGCTGAAATTGTTTAC-A-CATCATGGTTTTTTGTTAAAAACACGTTCCGGG
248 TTGGCAAAATTTTAGCCGAAATCGTGTACAACCATCATGGTTTTTTGCT-AAAACACGTTCCGGA
* * * *
43508 GCTCCGCCTCATTTTTGCATGATTTTTGGCGTAAAGAATCCGTGAAATATCTATATTCATGGAAC
312 GCCCCGACTCAGTTTTGCATGATTTTTGGCGTAAAGAATCCGTGAAATATC-ATATTCATCGAAC
* *
43573 CAAATACCAACCACATTCGATTTAACG-ATTTGTTTTTGCGAGCACCT-ATATCTTGTTTCGATT
376 CAAATACCAACCACATTCGATTTAA-GAATTTGTTTTTACGAGCACCTGA-ATCTTGTTTCGATG
*
43636 TAATTAG-AATTAATTC-AA-AAAAAATTGGAAAAAAGATATTAGAAGCGTGAAAAAACCCTTCA
439 TAATTAGAAATTAATTCGAAGAAAAAA--GGAAAAAAGATATTAAAAGCGTG--AAAACCCTTCA
43698 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGT
500 ATCTTTTTGGCGTTGAATTATATATTTTTTATGAGT
43734 ATTGTTATAA
Statistics
Matches: 467, Mismatches: 58, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
590 4 0.01
591 88 0.19
596 85 0.18
597 8 0.02
598 53 0.11
599 68 0.15
600 135 0.29
601 26 0.06
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (589 bp):
AGTTTTGCATGATTTTTGGCGCTAAAACTCATTGAAATATCTATATTCATCGAATAAAATCCCAG
CCACATTGCATTTAAGGATTTGTTTTTACGAGCATCTGTGTTTCAATTTAATTAGAAATTAATTC
AGAAAAAAAGGAAAAACGATATCAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGATGAATTAT
ATATTTTTCTAAGTACTGTGGCAAAAATAAAGAAAAACTTTTCGGGTCAGCTTTGGCAAAATTTT
AGCCGAAATCGTGTACAACCATCATGGTTTTTTGCTAAAACACGTTCCGGAGCCCCGACTCAGTT
TTGCATGATTTTTGGCGTAAAGAATCCGTGAAATATCATATTCATCGAACCAAATACCAACCACA
TTCGATTTAAGAATTTGTTTTTACGAGCACCTGAATCTTGTTTCGATGTAATTAGAAATTAATTC
GAAGAAAAAAGGAAAAAAGATATTAAAAGCGTGAAAACCCTTCAATCTTTTTGGCGTTGAATTAT
ATATTTTTTATGAGTGTCGTGGCAAAAAATTGAGAAAAGATTTTTTGGGTCAGTTTTTAGCCCCG
ACTT
Found at i:44508 original size:323 final size:323
Alignment explanation
Indices: 43848--44734 Score: 1135
Period size: 323 Copynumber: 2.7 Consensus size: 323
43838 TTTTTCTCAT
* * *
43848 AAAGGCTCCTTAAAATATCTATATTCATGTAACCAAATCTCAACCACATTGGATTTAAGGATTTG
1 AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTG
* * * *
43913 TTTTTACGAGTATTTGAATCTTGTTTCA-ATTTAATTAGAAATAAATTCGGAAAACAAATGGGAA
66 TTTTTACGAGAATCTGAATCTTGTTT-AGATTTAATTAGAAATAAATTCGG-AAA-AAATAGAAA
* * * *
43977 AACAATATTAGAAGCGTGAAAAACCCGTCAA-TCTTTTTGGTGTTGACTTATATATTTTTTTTGA
128 AACAATATTAGAAGCGTGAAAAACCCGCCAATTTTTTTTGGCGTTGAATTATATA-TTTTTTTGA
* * *
44041 GTATTGTGGC-AAATAATTCAGAAAAAAATTTTCGGGTTAGCTTTTAGCCGAAAATCGTGTACTA
192 GTATTGTGGCGAAA-AATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAAATCGTGTACTA
*
44105 ACCATCAAAGTTTTTAGACTAAAAATGCGTTTCGGGTCGACGACTCAATTTTGCATGATTTTTGG
256 ACCATCAAAGTTTTTAGACTAAAAATGCGTTTCGGGTCGACGACTCAATTTTGCATGATTTTGGG
44170 CAG
321 CAG
* * ** *
44173 AAAGACTCCTTGAAATATTTATATTCATCTAACCAAATATCAACCACATTGGATACAAGGATTTT
1 AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTG
* **
44238 TTTTTACGAGAATCCGAATCTTGTTTAGATTTAATTAGAAATTTATTCGGAAAAAATAGAAAAAC
66 TTTTTACGAGAATCTGAATCTTGTTTAGATTTAATTAGAAATAAATTCGGAAAAAATAGAAAAAC
* * *
44303 AATATTAGAAGCGTGAAAAGCCCGCCAATTTTTTTTGGCGTTGAATCATATAATTTTTTGAGTAT
131 AATATTAGAAGCGTGAAAAACCCGCCAATTTTTTTTGGCGTTGAATTATATATTTTTTTGAGTAT
* *
44368 TGTGGCGAAAAATGGAGAAAAAAACTTTTCGGGCCAGTTTTTAGCCGAAAATCGTGTA-TAAACC
196 TGTGGCGAAAAATTGAGAAAAAAA-TTTTCGGGTCAGTTTTTAGCCGAAAATCGTGTACT-AACC
* * ** *
44432 ATC-ACGATTTTT-GGCTGGAAATGCGTTTCGGCGTC-CCGACT-AAGTTTTGCATGATTTTGGG
259 ATCAAAG-TTTTTAGACTAAAAATGCGTTTCGG-GTCGACGACTCAA-TTTTGCATGATTTTGGG
*
44493 TAG
321 CAG
* * *
44496 AAAGACTCCTTGAATTATCTATATTAATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTG
1 AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTG
* * * * *
44561 TTTTCACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAA-AGGACAAA
66 TTTTTACGAGAATCTGAATCTTGTTTAGATTTAATTAGAAATAAATTCGGAAAAAATA-GAAAAA
* * * *
44625 CGATATTAGAAGCGTGAAAAACCCTTCAAATTTTTTTTTGGCCTTGAATTATATATTTTTTTAGA
130 CAATATTAGAAGCGTGAAAAACCC-GCCAA-TTTTTTTTGGCGTTGAATTATATATTTTTTT-GA
** * *
44690 GTATTGTGGCGATGAATTGAGGAAAAATTTTTCGGGTCAGTTTTT
192 GTATTGTGGCGAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTT
44735 GCAAAATTAT
Statistics
Matches: 487, Mismatches: 63, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
322 3 0.01
323 241 0.49
324 74 0.15
325 144 0.30
326 25 0.05
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (323 bp):
AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAACCACATTGGATTTAAGGATTTG
TTTTTACGAGAATCTGAATCTTGTTTAGATTTAATTAGAAATAAATTCGGAAAAAATAGAAAAAC
AATATTAGAAGCGTGAAAAACCCGCCAATTTTTTTTGGCGTTGAATTATATATTTTTTTGAGTAT
TGTGGCGAAAAATTGAGAAAAAAATTTTCGGGTCAGTTTTTAGCCGAAAATCGTGTACTAACCAT
CAAAGTTTTTAGACTAAAAATGCGTTTCGGGTCGACGACTCAATTTTGCATGATTTTGGGCAG
Found at i:47614 original size:655 final size:652
Alignment explanation
Indices: 44913--53015 Score: 6465
Period size: 655 Copynumber: 12.4 Consensus size: 652
44903 CTGGCTCAAT
*** * * *
44913 TTTGCATGATTTGGCGCA-AAA-ACTCCTTGAAATATCTATATTTATCTAAGCAAATCTTAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * *
44976 CATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTTGATTTAATTA-AAAAAAAT
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
** *
45040 TCGGAAAAAAACTAGAAAAATGATATTAGAAGCGTAAAAAACCCTTCAAGTTTTTTTGACGTTAA
131 TCGG-AAAAAA-TAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAA-TTTTTTTGACGTTGA
* * * * *
45105 ATTAT-TTTTTTTTCGGAGTATTGTGGCAAAATATTGAGGAAAAACATTTACGGATCAGCTTTTG
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
* * * **
45169 CAAAATTTTAGCCGAAATCGTATACTAACCATCACAGTTTTTGGACTGAAAATGCGTTCTAGAGC
258 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGC
* * * *
45234 TCCGGCACAATTCGAATGATTTTTGGCTTAAAGACTCCTTGAAATATCTATGTTCATTGTACCAA
323 CCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAA
* * * * *
45299 ACCTCAGCTACATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGTTTTAATG
388 ATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* * *
45364 AGAAATTAATACGAAAAAAAAGAAAAACAATATTAAAAGTGTTTAAAGCACGTCAA-TATTTTTG
453 AGAAATTAATTCGAAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTATTTTTG
* * * *
45428 GCGTTGAATTATATATTTTTT-TGAATATTGTGGCAAAAAATTAAGAAAAACCTTTTCGGGTCAG
518 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACATTTCGGATCAG
** *
45492 TTTTGAACCAAAATCGTGTACTAACCATCACGGTTTTTTGGCTAAAACCGCGTTTC-GGGCCCGA
583 TTTTGAATAAAAATCGTATACTAACCATCACGG-TTTTTGGCTAAAACCGCGTTTCGGGGCCCGA
* *
45556 CTCAGC
647 CACAGA
*
45562 TTTGCATGATTTTTAGCAGAAAGATTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * *
45627 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAGAAATAAAT
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
* *
45692 TCGGAAAAAATGGAAATAC-A-ATTAGAAGCGTGAAAAAA-CCTTCAATTTTTTT--CGTGTG--
131 TCGGAAAAAATAGAAAAACAATATTAGAAGCGT-AAAAAACCCTTCAATTTTTTTGACGT-TGAA
* * *** * * *
45750 TTGA-AT-TATTTGTCTGAGTTTTGTGGCAAATTTTTGAGGAAAAACT-TTT-TGGGTAAGTTTT
194 TT-ATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-TATTTACGGATCAGTTTT
* ** * * *
45811 TGCAAAATTTTAGTCGAAATCG---GGTAACCATCATGATTTTCTGG-CTAAAAACGCGTTCAGG
256 TGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTT-TGGACTAAAAACGCGTTCCGG
* * * * * ** **
45872 AGCTCTGGCTCAATTTTGTATGATTTTAAGCGCCAAGACTCCTTGAAATATCTATA-TTCATCT-
320 AGCCCCGGCACAA-TTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTA-AGTTCAT-TG
* * * * *
45935 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTTGAT
382 TACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
* ** ** * * *
46000 TTAATTAGAAATTAATTCGGAAAAAACTAGAAAAATGATATTAGAAGCGTACAAAACCCTTCAAG
447 TTAATTAGAAATTAATTC-GAAAAAA-AAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAA-
** * *
46065 GT-TTTTTGATGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAAATTGAGGAAAACAA-
509 GTATTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATT-AAGAAAA-AAC
* *
46128 ATTTACGGATCAGTTTTTGCAAAATTTTAGCCGAAATCATATACTAACCATCACGGTTTTTGGAC
571 ATTT-CGGATCAG-TTTTG---AA---TA---AAAATCGTATACTAACCATCACGGTTTTTGG-C
* * *
46193 TAAAAACGCGTTCCGGAGCCCCGACACA-A
624 TAAAACCGCGTTTCGG-GGCCCGACACAGA
* * * ** *
46222 TTCGCATGATTTTTGGC-GTAAAGCCTCCTTGAAATATCTACGTTCATTGT-ACCAAATCTCAGC
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATCTATATTCATT-TAAGCAAATCTCAGC
* * * * * **
46285 TACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTAATTAGAAATTA
64 CACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAA
* * ** * * * * *
46350 ATTC-GAAAAAAAAGAAAAACAATATTAGAAGTGTTTAAAGCACGTCAATATTTTTGGCGTTGAA
129 ATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAATTTTTTTGACGTTGAA
* * * *
46414 ATATATATTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAAAA-ACTTTTCGGGTCAG-TTTTG
194 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATA-TTTACGGATCAGTTTTTG
* * * * * *** * * * * * *
46476 AATCAAAATCGTGTA--CG-GAGCGTTTCCGCGGGCGAATC-C--ATTTTGAATTTGATAAATGC
258 ---CAAAAT--TTTAGCCGAAATCGTAT--ACTAAC-CATCACGGTTTTTGGA-CT-AAAAACGC
* ** * ** * * * * * * **
46535 ATT-----G-CTTGTGAAGTATGT-G-TTCG-TGTATGCCCTATAGACCTGCCTGTTGTTGAT-T
313 GTTCCGGAGCCCCG-GCACAAT-TCGCAT-GATTTTTGGCGTAAAGA-CT-CC--TTG-AAATAT
** * * * * *** * * ** *
46590 GGAA-AT--TTGAAACGGATAT-TCGAAAAAAATGATTG-CTTAATTACAGTATTG-ATTT-CG-
370 CTAAGTTCATTG-TAC-CAAATCTC-AGCTACAT--TGGACTTAA--GGA-T-TTGTTTTTACGA
* * * * * * *** * * * * ** *** * *
46647 GAATTTGTATATTTTGTGGT-AACTGCGTT-GAGTATT-GTCCG-ACAAATTGTTTATCAATGAC
426 GCATCTG-A-ATCTTGT-TTCGATTTAATTAGA-AATTAATTCGAAAAAAAAGAAAAACAAT-AT
** * * ** ** *** **
46708 T-GAAGAATATGAA-C-TTTCTACTTATGACCGTCACGAATTGAATTATAATCAAATTGCTTTGG
486 TAGAAGCGTTTAAAGCACGTC-AAGTAT--TTTTGGCG--TTGAATTAT-AT---ATT--TTT--
* * ** *** * ** * ** * * * * *****
46770 GCCGCTTACCAATGTC-AGTAATTGACGATTATACAATTC-GAACAATTTTGAATTTGCCTCAAA
538 TCTGAGTA-TTGTGGCAAAAAATT-AAGAAAAAACATTTCGGATCAGTTTTGAATAAAAATC---
* * * ** * * *
46833 GAAAAACTGAGTCCATCACAATTTTATGGCTAAAACCGCGCTTCGGGGCCAC-ACTCAGT
598 G-TATACT-A-ACCATCACGGTTTT-TGGCTAAAACCGCGTTTCGGGGCC-CGACACAGA
* * *
46892 TTTGCAGGATTTTTAGCAGAAAGACTCCTTGAAATATTTATATTCATTTAAGCAAATCTGAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* *
46957 CATTGGATTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTTTTTGATTTAATTA-AAAAAAAT
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
* *
47021 TCAGAAAAAATTAGAAAAACGATATTAGAAGCGTAAAAAAACCCTTCAAGTTTTTTTGACGTTGA
131 TCGGAAAAAA-TAGAAAAACAATATTAGAAGCGT-AAAAAACCCTTCAA-TTTTTTTGACGTTGA
47086 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
**
47151 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACTTGTTCCGGAGC
258 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGC
* * *
47216 CCCGGCACATTTCCCATGATTTTTGGCGTAAAGACTCCTTGAAATATCCAAGTTCATTGTACCAA
323 CCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAA
* *
47281 ATCTCAGCTATATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTAATT
388 ATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* * *
47346 AGAAATTAATTTGAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TATTTTTG
453 AGAAATTAATTCGAAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTATTTTTG
* * * *
47410 GCGTTGGATTAAATATTTTTTCTGAGTATTGTGTCAAAAAATTAAGAAAAAAACATTTCGGGTCA
518 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAG-AAAAAACATTTCGGATCA
* ** *
47475 GTTTTGAATAAAAATCGTGTACTAACCA-CTACAATTTTATGGCTAAAACCGCGTTTCGGGGCCA
582 GTTTTGAATAAAAATCGTATACTAACCATC-ACGGTTTT-TGGCTAAAACCGCGTTTCGGGGCCC
*
47539 GACACAGT
645 GACACAGA
* * * * *
47547 TTTGGAGGATTTTTAGCAGAAAGACTCCTTAAAATATCTATATTGATTTAAGAAAATCTCAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * * *
47612 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTTTTTTAGATTTAATTA-AACAGAA
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATC-TTTTTTCGATTTAATTAGAAAAAAA
* *
47676 TTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTAAAAAACCCTTCATGTTTTTTTGACGTTGA
130 TTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCA-ATTTTTTTGACGTTGA
* * *
47741 ATTATACATTTTTTATGAGTATTGTGGCAAGAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
* **
47806 CAAAATTTTAGCCGAAATCGTATACTAACAATCACGGTTTTTGGACTAAAAACTTGTTCCGGAGC
258 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGC
* * *
47871 CCCGGCAAAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTAATTGTACCAA
323 CCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAA
* * *
47936 ATCTCAACTACATTGGACTTAAGGATTTGTTTTTACGAGCATCGGAATCTTGTTGCGATTTAATT
388 ATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* *
48001 AGAAATTAATTCGACAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TATTTT
453 AGAAATTAATTCG--AAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTATTTT
* *
48065 TGGCGTTTG-ATTAAATATTTTTTCTGAGTATTGTGGCAAAAAAATTAAGAAAAAAACTTTTCGG
516 TGGCG-TTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTAAG-AAAAAACATTTCGG
* ** * ***
48129 GTCAGTTTTGAACCAAAATCGTGTACTAACCATCATAATTTTATGGCTAAAACCGCGTTTCGGGG
578 ATCAGTTTTGAATAAAAATCGTATACTAACCATCACGGTTTT-TGGCTAAAACCGCGTTTCGGGG
* *
48194 CCCGACTCAGT
642 CCCGACACAGA
* * *
48205 TTTGCAGGATTTTTAGCAGAAAGACTCCTTAAAATATCTATATTCATTTAAGTAAATCTCAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * *
48270 CATTGGATTTAAGGATTTCATTTTTACGAGCATCTTAATCTTTTTTTGATTTAATT--AAAAAAG
66 CATTGGATTTAAGGATTTC-TTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAA
* *
48333 TTCGGCAAAAACTAGAAAAACAATATTAGAAGCGTAAAAAAACCTTCAAGTTTTTTTGACGTTGA
130 TTCGG-AAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAA-TTTTTTTGACGTTGA
* *
48398 ATTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGATGAATAAA-A-TTACGGATCAGTTTTT
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA-AAATATTTACGGATCAGTTTTT
* * * **
48461 GCAAAAATTTAGCTGAAATCGTATACTAATCATCACGGTTTTTGGACTAAAAACGCGTTTTGGAG
257 GCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAG
* ** * * *
48526 CCTCGATACAATTCGCATGATTTTTGGCGTAAAGACTCGTTGAAATATCTATGATCATTGTACCA
322 CCCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCA
* ** *
48591 AATCTCAGCTACATTGCACTTAAGGATTTGTTTTTATAAGCATCTGAATCATT-TTTAGA--T--
387 AATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATC-TTGTTTCGATTTAA
* * ** * * *
48651 TTAG---TT-A----AAAAAATAGAAAAACGATATTAGAAGCGTAAGAAAAC-CATCAAGTTTTT
451 TTAGAAATTAATTCGAAAAAAAAGAAAAACAATATTAGAAGCGT-TTAAAGCACGTCAAGTATTT
** * * * * *
48707 TTGATGTTGAATTATATATTTTTT-TTAGTATTGTGGAAAAAAATTGAGGAAAAATATTTACGGA
515 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACATTT-CGGA
* * * **
48771 TCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTT
579 TCAG-TTTTG---AA---TA---AAAATCGTATACTAACCATCACGGTTTTTGG-CTAAAACCGC
* * *
48836 GTTCCGGAGCCCCGGCACA-A
633 GTTTCGG-GGCCCGACACAGA
* * * *
48856 TTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTGT-ACCAAATCTCAGC
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATCTATATTCATT-TAAGCAAATCTCAGC
* * * * * **
48919 TACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTAATTAGAAATTA
64 CACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAA
* * *** * * * * *
48984 ATTC-GAAAAAAAAGGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAATATTTTTGGCGTTCG
129 ATTCGGAAAAAATA-GAAAAACAATATTAGAAGCGTAAAAAACCCTTCAATTTTTTTGACGTT-G
* * * *
49048 -ATTATATATTTTTTCAGAGTATTGTGGCAAAAAATT-AAGAAAAA-ACTTTTCGGGTCAG-TTT
192 AATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATA-TTTACGGATCAGTTTT
* * ** *
49109 TG----A----A-CCAAAATCGTGTACTAACCATCACAATTTTTTGG-CTAAAACCGCGTTCCGG
256 TGCAAAATTTTAGCCGAAATCGTATACTAACCATCAC-GGTTTTTGGACTAAAAACGCGTTCCGG
* * * * * * *
49164 -GGCCCGACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTCAAATATCTATA-TTCATT-
320 AGCCCCGGCACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTA-AGTTCATTG
** * * * * * *
49225 TAAGTAAATCTCAGCCACATTGCATTTAAGGATTTCTTTTTACGAGCATCTTAATCTT-TTTTGA
382 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
** * ** *
49289 TTTAATTA-AAA--AATTCGGAAAAAACTTGAAAAACAATATTAGAAGCG-TAAAATAACCTTCA
446 TTTAATTAGAAATTAATTC-GAAAAAA-AAGAAAAACAATATTAGAAGCGTTTAAAGCA-CGTCA
* * * * *
49350 AGTTTTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGATGAATAAA-A
508 AGTATTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAAAAACA
* *
49414 TTACGGATCAGTTTTTGCAAAATTTTAACTGAAATCGTATACTAACCATCACGGGTTTTGGACTA
572 TTTCGGATCAG-TTTTG---AA---TAA---AAATCGTATACTAACCATCACGGTTTTTGG-CTA
* * *
49479 AAAACGTGTTTCGGAGCCCCGACACA-A
626 AAACCGCGTTTCGG-GGCCCGACACAGA
* * * * *
49506 TTCGCATGATTTTTGGC-GTAAAGACTCGTTGAAATATCTATGA-TCATTGT-ACCAAATCTGAG
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATCTAT-ATTCATT-TAAGCAAATCTCAG
* * * * * *
49568 CTACATTGGACTTAAGGATTTGTTTTTATGAGCATCTGAATCATTTTTAGATTTAATT--AAAAA
63 CCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAA
* ** * * *
49631 AATACATAAAAAAATAGAAAAACGATATTAGAAGCGTAAGAAACCCATCAAGTTTTTTTGACGTT
128 AATTC-GGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAA-TTTTTTTGACGTT
* * *
49696 GAATTATATATATATTTTTTTAGTATTGTGGAAAAAAATTGAGGAAAAATATTTACGGATCAGTT
191 GAATTATATAT-T-TTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTT
* **
49761 TTTGCAAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTTGTTCCG
254 TTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCG
* *
49826 GAGCCCCGGCACAATTCGCATGATTTTTGGCGTAAGGACTCCTTGAAATATCTATGTTCATTGTA
319 GAGCCCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTA
* *
49891 CCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTAGATTT
384 CCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* *
49956 AATTAGAAATTAATTCGAAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TAT
449 AATTAGAAATTAATTCG-AAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTAT
*
50020 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACTTTTCGG
513 TTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACATTTCGG
* * ** * * *
50085 GTTAGTTTTGAACCAAAATCGTGTACGTTA-CATCACGGTTTTTGGCTAAAACCACGTTTCGGGG
578 ATCAGTTTTGAATAAAAATCGTATAC-TAACCATCACGGTTTTTGGCTAAAACCGCGTTTCGGGG
* *
50149 CCCGACTCAGT
642 CCCGACACAGA
* * *
50160 TTTGCATGATATTTAGCAGAAAGACTCCTTGAAATATTTATATTCATTTAAGCAAATCTGAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * *
50225 CATTGGATTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTTTTTGATTTAATTA-AAAAATAT
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
* * * * * *
50289 TCTGAAAAAATTAGAAAATCTATATTAGAAGCGTAAAACACCGTTCAAGTTTTATTGACGTTGAA
131 TCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAA-TTTTTTTGACGTTGAA
* * *
50354 TTATATATTTTTTCTGAGTATTGT-GTAAAAAATTGTGGAAAATTATTTACGGATCAGTTTTTGC
194 TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTGC
* **
50418 AAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTTGTTCCGGAGCC
259 AAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGCC
* * *
50483 CCGACACAATTCGCATGATTTTTGGCGTAAGGACTCCTTGAAATATCTATGTTCATTGTACCAAA
324 CCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAAA
* * * *
50548 TCTCAGCTACATTGGACTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTTTTTGATTTAATTA
389 TCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * * * * * * * *
50613 AAAAATATTTTGAAAAAATTAGAAAATCTATATTAGAAGCG--TAAAACACCCTTCAAGT-TTTA
454 GAAATTAATTCGAAAAAA-AAGAAAAACAATATTAGAAGCGTTTAAAGCA--CGTCAAGTATTT-
* * * * *
50675 TTGACGTTGAATTAAATATTTTTTCTGAGTATTGT-GTAAAAAATTGAG-GAAAACTATTTACGG
515 TTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAAC-ATTT-CGG
* * *
50738 ATCAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACT
578 ATCAG-TTTTG---AA---TA---AAAATCGTATACTAACCATCACGGTTTTTGG-CTAAAACCG
* * * * *
50803 TGTTCCGGAGCCCCGGCACAAA
632 CGTTTCGG-GGCCCGACACAGA
* * * * * * *
50825 TTCGCATAATTTTTGGC-GTAAGGACTCCTTGAAATATCTGTGTTCATTGT-ACCAAATCTCAGC
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATCTATATTCATT-TAAGCAAATCTCAGC
* * * * **
50888 TACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTGCGATTTAATTAGAAATTA
64 CACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAA
* * * *** * * * * * * *
50953 ATTCGAAAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAATATTTTCGGCGTTGG
129 ATTCG-GAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAATTTTTTTGACGTTGA
* * * *
51018 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAAATT-AAGAAAAAAACTTTTCGGGTCAG-TTT
193 ATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGGAAAAATA-TTTACGGATCAGTTTT
* * * * *
51081 TG----A----A-CCAAAATCGTGTACTAACCATCACAGTTTTTTGG-CTAAAACCGCGTTTCGG
256 TGCAAAATTTTAGCCGAAATCGTATACTAACCATCAC-GGTTTTTGGACTAAAAACGCGTTCCGG
* * * * * * *
51136 -GGCCCGACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTAAAATATCTATA-TTCATT-
320 AGCCCCGGCACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTA-AGTTCATTG
** * * * * * *
51197 TAAGTAAATCTCAGCCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTTTTTTGA
382 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* * * * ** *
51262 TTTAATTA-AAA-AAATTCGGAAAAAACTAGAAAAACGATATTAGAAGCG-TAAAAAAACCTTCA
446 TTTAATTAGAAATTAATTC-GAAAAAA-AAGAAAAACAATATTAGAAGCGTTTAAAGCA-CGTCA
* ** * * * *
51324 AGTTTTTTTGATGTTGAATTATATATTTCTTCTGAGTATTGTGGTAAAAAATTGATGAATAAA-A
508 AGTATTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAAAAACA
* *
51388 TTACGGATCAGTTTTTGCAAAATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGGACTA
572 TTTCGGATCAG-TTTTG---AA---TA---AAAATCGTATACTAACCATCACGGTTTTTGG-CTA
* * ** *
51453 AAAACGCGTTCCGGAACCCCGGCACA-A
626 AAACCGCGTTTCGG-GGCCCGACACAGA
* * * *
51480 TTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCA-TTATACCAAATCTCAGC
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATCTATATTCATTTA-AGCAAATCTCAGC
* * * * * * * **
51543 TACATTGGACTTAAGGATTTATTTTTACTAGCATTTGAATCTTGTTGCGATTTAATTAGAAATTA
64 CACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAA
* * * * ** * * *
51608 ATTC-GAAAAAAAACAAAAACAATATTTGAAGTGTTTAAAGCACGTCAATATTTTTTG-CGTTGA
129 ATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAAT-TTTTTTGACGTTGA
** * *
51671 ATTATATATTTTTTCAAAGTATTGTGGCAAAAAATTGAGGAAAAAAATTTACGGATCAGTTTGTG
193 ATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTG
* **
51736 CAGAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCAATCCGGAGC
258 CAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGC
* * *
51801 CCCGGCACAATTCGCATGATTTTCGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTATCAA
323 CCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAA
* *
51866 ATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACTAGCATCTGAATCTTGTTGCGATTTAATT
388 ATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* * * *
51931 TGAAATTAATTCGAAAAAAAACAAAAAC-A-A-T--AAGTGTTTAAAGCACGTCAA-TATTTATG
453 AGAAATTAATTCGAAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTATTTTTG
* * * *
51990 GCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTAAGGAAAAACTTTTCGGGTCAG
518 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACATTTCGGATCAG
** * * * *
52055 TTTTGAACCAAAATCGTGTACTAACCATCACAGTTTATTGGCTCAAACCGCGTTTCGGGGCCCAA
583 TTTTGAATAAAAATCGTATACTAACCATCACGGTTT-TTGGCTAAAACCGCGTTTCGGGGCCCGA
* *
52120 CTCAGT
647 CACAGA
* *
52126 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATTTATATTCAGTTAAGCAAATCTCAGCCA
1 TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
* * * *
52191 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTGTTTCGATTTAACTAGAAATAAAT
66 CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
* * ** **
52256 TCGGAAAAAATGGAAAAAC-A-ATTAGAAGCGTGAAAAGGCCTTCATATTTTTTTGGTGTTG-A-
131 TCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCA-ATTTTTTTGACGTTGAAT
* * * * *
52317 -AT-TA-TTTTTCTGAGTTTTGTGGCAAAAATTTGAGGAAAAACT-TTT-TGGGTAAGTTTTTGC
195 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-TATTTACGGATCAGTTTTTGC
* * * * * * *
52377 AAAATTTTAGTCGAAATC--AT-GTAACCATCACGTTTTTCTGG-CAAAAAACGCGTTCAGAATC
259 AAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTT-TGGACTAAAAACGCGTTCCGGAGC
* * * * * ** * * * *
52438 CCTGGCTCAATTTTGCCTGATTTATATCGCAAATACTCCTTGAAATATCCATA-TTCATCT-AAC
323 CCCGGCACAA-TTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTA-AGTTCAT-TGTAC
* * * *
52501 CAAATCTCAGCCACATTGGATTTAAGGATTTGTTTATACGACCATCTGAATCTTGTTTCGATTTA
385 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTA
* ** * ** * * * *
52566 ATTAAAAACAAATTCGAAAAAAAAAACTAGAAAAACGATATTAGAAGCGTGAAAAACTCTTTAAG
450 ATTAGAAATTAATTCG---AAAAAAA--AGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAG
* * * *
52631 TTTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAATTGAGGAAAAAAACT
510 TATTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATT-AAG-AAAAAACA
* * * * *
52696 TTTCGGGTAAGTTTTTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACAGTTTTGGGGCTA
572 TTTCGGATCAG-TTTTG---AA---TA---AAAATCGTATACTAACCATCACGGTTTT-TGGCTA
* ** * * *
52761 AAAACATGTTCCGGAGCCCCGACTCA-A
626 AAACCGCGTTTCGG-GGCCCGACACAGA
* * * * * * *** **
52788 TTCGCATAATTTTTGGC-GTAAAGACTCCTCG-AATGATCGATATTTATCGCATTAAAT-TGCAG
1 TTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAAT-ATCTATATTCATTTAAGCAAATCT-CAG
* * * * **
52850 CTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
63 CCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAA
* * * * * *
52915 TATTC-G-AAAAA-AG-AAAACAATATTAGAAGCCT-GAAAAGCCTGTCAATATTTTTGGCGTTG
128 AATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCT-TCAATTTTTTTGACGTTG
* * * *
52975 ATTTATATTTTTTTTTTTAGGTATTGTGGCAAAAAATTGAG
192 AATTATATATTTTTTCTGA-GTATTGTGGCAAAAAATTGAG
53016 AAATAAAACT
Statistics
Matches: 6076, Mismatches: 1011, Indels: 718
0.78 0.13 0.09
Matches are distributed among these distances:
637 37 0.01
638 113 0.02
639 16 0.00
640 154 0.03
641 106 0.02
642 166 0.03
643 44 0.01
644 61 0.01
645 99 0.02
646 171 0.03
647 36 0.01
648 55 0.01
649 114 0.02
650 394 0.06
651 265 0.04
652 371 0.06
653 174 0.03
654 144 0.02
655 648 0.11
656 458 0.08
657 354 0.06
658 232 0.04
659 101 0.02
660 156 0.03
661 64 0.01
662 304 0.05
663 205 0.03
664 108 0.02
665 240 0.04
666 100 0.02
667 62 0.01
668 27 0.00
669 38 0.01
670 190 0.03
671 50 0.01
672 48 0.01
673 80 0.01
674 31 0.01
675 18 0.00
676 23 0.00
677 17 0.00
678 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (652 bp):
TTTGCATGATTTTTAGCAGAAAGACTCCTTGAAATATCTATATTCATTTAAGCAAATCTCAGCCA
CATTGGATTTAAGGATTTCTTTTTACGAGCATCTGAATCTTTTTTCGATTTAATTAGAAAAAAAT
TCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAACCCTTCAATTTTTTTGACGTTGAATT
ATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAATATTTACGGATCAGTTTTTGCAA
AATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGGAGCCCC
GGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTAAGTTCATTGTACCAAATC
TCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
AATTAATTCGAAAAAAAAGAAAAACAATATTAGAAGCGTTTAAAGCACGTCAAGTATTTTTGGCG
TTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTAAGAAAAAACATTTCGGATCAGTTT
TGAATAAAAATCGTATACTAACCATCACGGTTTTTGGCTAAAACCGCGTTTCGGGGCCCGACACA
GA
Found at i:51539 original size:331 final size:330
Alignment explanation
Indices: 44836--53139 Score: 6614
Period size: 331 Copynumber: 25.3 Consensus size: 330
44826 TAAATACTCA
* ** * * *
44836 TTGCAAAATTTTAGTCGAAATC--A-GGTAACCATTACGGTTTTTCTGG-CAAAAAACGCGTTCA
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGG-TTTT-TGGACTAAAAACGCGTTCC
* * * * * * * * *
44897 GGAGCTCTGGCTCAATTTTGCATGA--TTTGGCGCAAAAACTCCTTGAAATATCTATATTTATCT
64 GGAGCCCCGACACAA-TTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCAT-T
* * * * * * *
44960 -AAGCAAATCTTAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATTTTTTTTTGA
127 GTACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* ** *
45024 TTTAATTAAAAAAAATTCGGAAAAAAACTAGAAAAATGATATTAGAAGCGTAAAAAACCCTTCAA
192 TTTAATTAAAATAAATTCGG-AAAAAA-TAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTCAA
* * * *
45089 GTTTTTTTGACGTTAAATTAT-TTTTTTTTCGGAGTATTGTGGCAAAATATTGAGGAAAAACATT
254 GTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-ATT
*
45153 TACGGATCAGCTT
318 TACGGATCAGTTT
* * * **
45166 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACAGTTTTTGGACTGAAAATGCGTTCTAG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * *
45231 AGCTCCGGCACAATTCGAATGATTTTTGGCTTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * * * *
45296 CAAACCTCAGCTACATTGGAATTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGTTTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * * * ** * *
45361 ATGAGAAATTAATAC-GAAAAAAAAGAAAAACAATATTAAAAGTGTTTAAAGCACGTCAA-TATT
196 ATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTTT
* * * * *
45424 TTTGGCGTTGAATTATATATTTTTT-TGAATATTGTGGCAAAAAATT-AAGAAAAACCTTTTCGG
259 TTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-ATTTACGG
*
45487 GTCAG-TT
323 ATCAGTTT
* * * *
45494 TTG----A----A-CCAAAATCGTGTACTAACCATCACGGTTTTTTGG-CTAAAACCGCGTTTCG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGG-TTTTTGGACTAAAAACGCGTTCCG
* * * * * *
45549 G-G-CCCGACTCAGCTTTGCATGATTTTTAGCAG-AAAGATTCCTTGAAATATCTATATTCATT-
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTG
* * * * * *
45610 TAAGCAAATCTCAGCCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTAAATCTTGTTTCGA
128 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* * *
45675 TTTAATTAGAAATAAATTCGGAAAAAATGGAAATAC-A-ATTAGAAGCGTGAAAAAACCTTCAA-
192 TTTAATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTCAAG
* * *** *
45737 TTTTTTT--CGTGTG--TTGA-AT-TATTTGTCTGAGTTTTGTGGCAAATTTTTGAGGAAAAACT
255 TTTTTTTGACGT-TGAATT-ATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAAT
** * *
45796 TTTTGGGTAAGTTT
317 TTACGGATCAGTTT
* ** * * *
45810 TTGCAAAATTTTAGTCGAAATCG---GGTAACCATCATGATTTTCTGG-CTAAAAACGCGTTCAG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTT-TGGACTAAAAACGCGTTCCG
* * * * * * ** ** *
45871 GAGCTCTGGCTCAATTTTGTATGATTTTAAGCGCCAAGACTCCTTGAAATATCTATATTCATCT-
65 GAGCCCCGACACAA-TTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCAT-TG
* * * *
45935 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTTGAT
128 TACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGAT
* ** *
46000 TTAATTAGAAATTAATTCGGAAAAAACTAGAAAAATGATATTAGAAGCGTACAAAACCCTTCAAG
193 TTAATTA-AAATAAATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTA-AAAAGCCTTCAAG
* * *
46065 GTTTTTTGATGTTGAATTATATATTTTTTCTGAGTATTGTTGCAAAAAAATTGAGGAAAACAAAT
255 TTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGG-AAA-AAAT
46130 TTACGGATCAGTTT
317 TTACGGATCAGTTT
*
46144 TTGCAAAATTTTAGCCGAAATCATATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* *
46209 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGCCTCCTTGAAATATCTACGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* *
46274 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * ** * *
46339 ATTAGAAATTAATTC-GAAAAAAAAGAAAAACAATATTAGAAGTGTTTAAAGCACGTCAA-TATT
196 ATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTTT
* * * *
46402 TTTGGCGTTGAAATATATATTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAAAAACTTTTCGG
259 TTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAA-TTTACGG
*
46466 GTCAG-TT
323 ATCAGTTT
* * * * * *** * * * * *
46473 TTGAATCAAAATCGTGTA--CG-GAGCGTTTCCGCGGGCGAATC-C--ATTTTGAATTTGATAAA
1 TTG---CAAAAT--TTTAGCCGAAATCGTAT--ACTAAC-CATCACGGTTTTTGGA-CT-AAAAA
* * * ** * ** * * * * * * ***
46532 TGCATTGC-TTG---TGA-AGTATGT-G-TTCG-TGTATGCCCTATAGACCTGCC-TGTTGT-TG
56 CGCGTTCCGGAGCCCCGACACAAT-TCGCAT-GATTTTTGGCGTAAAGA-CT-CCTTGAAATAT-
* *** * * * *** * * ** *
46587 AT-TGGAAATTTGAAACGGATAT-TCGAAAAAAATGATTG-CTTAATTACAGTATTG-ATTT-CG
116 CTATGTTCA-TTG-TAC-CAAATCTC-AGCTACAT--TGGACTTAA--GGA-T-TTGTTTTTACG
* * * * * * * *** * * * * * * *** * *
46647 -GAATTTGTATATTTTGTGGTAACTGCGTT-GAGT-ATTGTCCG-ACAAATTGTTTATCAATGAC
171 AGCATCTGAATCTTTTTTCG--ATTTAATTAAAATAAAT-TCGGAAAAAATAGAAAAACAAT-AT
** ** * * * *** * *
46708 T-GAAGAATATGAA-CTTTCTACTTATGACCGTCACGAATTGAATTATAATCAAATTGCTTTGGG
232 TAGAAGCGTAAAAAGCCTTCAAGTT-T--TTTTGACG--TTGAATTAT-AT---ATT--TTT--T
* ** *** * ** * * * *
46771 CCGCTTACCAATGTC-AGTAATTGACGATTATACAA-TT-C-GAACA-ATT
284 CTGAGTA-TTGTGGCAAAAAATTGAGGA--A-AAAATTTACGGATCAGTTT
* * * * ** *
46817 TTG---AA-TTT-GCCTCAAA--GAAAAACTGAGTCCATCACAATTTTATGG-CTAAAACCGCGC
1 TTGCAAAATTTTAGCC-GAAATCG-TATACT-A-ACCATCACGGTTTT-TGGACTAAAAACGCG-
* * * * * * * * *
46874 TT-CGGGGCCAC-ACTCAGTTTTGCAGGATTTTTAGCAG-AAAGACTCCTTGAAATATTTATATT
60 TTCCGGAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTT
* * * * * *
46936 CATT-TAAGCAAATCTGAGCCACATTGGATTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTT
123 CATTGT-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTT
* * * * *
47000 TTTGATTTAATTAAAAAAAATTCAGAAAAAATTAGAAAAACGATATTAGAAGCGTAAAAAAACCC
187 TTCGATTTAATTAAAATAAATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGT--AAAAAGCC
47065 TTCAAGTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA
249 TTCAAGTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA
47130 ATATTTACGGATCAGTTT
314 A-ATTTACGGATCAGTTT
**
47148 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * * *
47213 AGCCCCGGCACATTTCCCATGATTTTTGGCGTAAAGACTCCTTGAAATATCCAAGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * *
47278 CAAATCTCAGCTATATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * *** * *
47343 ATTAGAAATTAATT-TGAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TATT
196 ATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTTT
* * * * * *
47406 TTTGGCGTTGGATTAAATATTTTTTCTGAGTATTGTGTCAAAAAATTAAGAAAAAAACATTT-CG
259 TTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAG-GAAAAA-ATTTACG
*
47470 GGTCAG-TT
322 GATCAGTTT
* * ** * *
47478 TTG---AA---TA---AAAATCGTGTACTAACCA-CTACAATTTTATGG-CTAAAACCGCGTTTC
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATC-ACGGTTTT-TGGACTAAAAACGCGTTCC
* * * * * * * * * *
47532 GG-GGCCAGACACAGTTTTGGAGGATTTTTAGCAG-AAAGACTCCTTAAAATATCTATATTGATT
64 GGAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATT
** * * * * *
47595 -TAAGAAAATCTCAGCCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTTTTTTA
127 GT-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATC-TTTTTTC
* * *
47659 GATTTAATTAAACA-GAATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTAAAAAACCCTTC
190 GATTTAATTAAA-ATAAATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTC
* * * *
47723 ATGTTTTTTTGACGTTGAATTATACATTTTTTATGAGTATTGTGGCAAGAAATTGAGGAAAAATA
252 AAGTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-A
47788 TTTACGGATCAGTTT
316 TTTACGGATCAGTTT
* **
47803 TTGCAAAATTTTAGCCGAAATCGTATACTAACAATCACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * *
47868 AGCCCCGGCAAAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTAATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * * *
47933 CAAATCTCAACTACATTGGACTTAAGGATTTGTTTTTACGAGCATCGGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * *** * *
47998 ATTAGAAATTAATTCGACAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TAT
196 ATTA-AAATAAATTCG-GAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTT
* * * * *
48062 TTTTGGCGTTTG-ATTAAATATTTTTTCTGAGTATTGTGGCAAAAAAATTAAGAAAAAAACTTTT
258 TTTTGACG-TTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGGAAAAAA-TTTA
*
48126 CGGGTCAG-TT
320 CGGATCAGTTT
* * *** * *
48136 TTG----A----A-CCAAAATCGTGTACTAACCATCATAATTTTATGG-CTAAAACCGCGTTTCG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTT-TGGACTAAAAACGCGTTCCG
* * * * * * * *
48191 G-GGCCCGACTCAGTTTTGCAGGATTTTTAGCAG-AAAGACTCCTTAAAATATCTATATTCATT-
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTG
** * * * * *
48253 TAAGTAAATCTCAGCCACATTGGATTTAAGGATTTCATTTTTACGAGCATCTTAATCTTTTTTTG
128 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTT-GTTTTTACGAGCATCTGAATCTTTTTTCG
* * *
48318 ATTTAATTAAAA-AAGTTCGGCAAAAACTAGAAAAACAATATTAGAAGCGTAAAAAAACCTTCAA
191 ATTTAATTAAAATAAATTCGG-AAAAAATAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTCAA
* *
48382 GTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGATGAATAAAA-T
254 GTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA-AAAATT
48446 TACGGATCAGTTT
318 TACGGATCAGTTT
* * * **
48459 TTGCAAAAATTTAGCTGAAATCGTATACTAATCATCACGGTTTTTGGACTAAAAACGCGTTTTGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * *
48524 AGCCTCGATACAATTCGCATGATTTTTGGCGTAAAGACTCGTTGAAATATCTATGATCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* ** * *
48589 CAAATCTCAGCTACATTGCACTTAAGGATTTGTTTTTATAAGCATCTGAATCATTTTTAGATTT-
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * *
48653 AGT----T--A-----AAAAAATAGAAAAACGATATTAGAAGCGTAAGAAAACCATCAAGTTTTT
196 ATTAAAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAA-AAAGCCTTCAAGTTTTT
* * *
48707 TTGATGTTGAATTATATATTTTTT-TTAGTATTGTGGAAAAAAATTGAGGAAAAATATTTACGGA
260 TTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-ATTTACGGA
48771 TCAGTTT
324 TCAGTTT
* **
48778 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
*
48843 AGCCCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* *
48908 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * *** * *
48973 ATTAGAAATTAATTC-GAAAAAAAAGGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TAT
196 ATTA-AAATAAATTCGGAAAAAATA-GAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTT
* * * *
49036 TTTTGGCGTTCG-ATTATATATTTTTTCAGAGTATTGTGGCAAAAAATT-AAGAAAAAACTTTTC
258 TTTTGACGTT-GAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAA-TTTAC
*
49099 GGGTCAG-TT
321 GGATCAGTTT
* * ** *
49108 TTG----A----A-CCAAAATCGTGTACTAACCATCACAATTTTTTGG-CTAAAACCGCGTTCCG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCAC-GGTTTTTGGACTAAAAACGCGTTCCG
* * * * * * *
49163 G-GGCCCGACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTCAAATATCTATATTCATT-
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTG
** * * * * *
49225 TAAGTAAATCTCAGCCACATTGCATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTTTTT-GA
128 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* *
49289 TTTAATT-AAA-AAATTCGGAAAAAACTTGAAAAACAATATTAGAAGCGTAAAATAACCTTCAAG
192 TTTAATTAAAATAAATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTAAAA-AGCCTTCAAG
* * *
49352 TTTTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAATTGATGAATAAAA-TT
255 TTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA-AAAATTT
49416 ACGGATCAGTTT
319 ACGGATCAGTTT
* * * * *
49428 TTGCAAAATTTTAACTGAAATCGTATACTAACCATCACGGGTTTTGGACTAAAAACGTGTTTCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* *
49493 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCGTTGAAATATCTATGATCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * * *
49558 CAAATCTGAGCTACATTGGACTTAAGGATTTGTTTTTATGAGCATCTGAATCATTTTTAGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* ** * * *
49623 ATTAAAA-AAATACATAAAAAAATAGAAAAACGATATTAGAAGCGTAAGAAACCCATCAAGTTTT
196 ATTAAAATAAATTC-GGAAAAAATAGAAAAACAATATTAGAAGCGTAA-AAAGCCTTCAAGTTTT
* * *
49687 TTTGACGTTGAATTATATATATATTTTTTTAGTATTGTGGAAAAAAATTGAGGAAAAATATTTAC
259 TTTGACGTTGAATTATATAT-T-TTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAA-ATTTAC
49752 GGATCAGTTT
321 GGATCAGTTT
* **
49762 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* *
49827 AGCCCCGGCACAATTCGCATGATTTTTGGCGTAAGGACTCCTTGAAATATCTATGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
*
49892 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTAGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * *** * *
49957 ATTAGAAATTAATTCGAAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TATT
196 ATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTTT
* * *
50021 TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT-AAGAAAAAACTTTTCGG
259 TTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAA-TTTACGG
* *
50085 GTTAG-TT
323 ATCAGTTT
* * * * * *
50092 TTG----A----A-CCAAAATCGTGTACGTTA-CATCACGGTTTTTGG-CTAAAACCACGTTTCG
1 TTGCAAAATTTTAGCCGAAATCGTATAC-TAACCATCACGGTTTTTGGACTAAAAACGCGTTCCG
* * * * * * * *
50146 G-GGCCCGACTCAGTTTTGCATGATATTTAGCAG-AAAGACTCCTTGAAATATTTATATTCATT-
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTG
* * * * * * *
50208 TAAGCAAATCTGAGCCACATTGGATTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTTTTTGA
128 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* * *
50273 TTTAATTAAAA-AATATTCTGAAAAAATTAGAAAATCTATATTAGAAGCGTAAAACA-CCGTTCA
192 TTTAATTAAAATAA-ATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTAAAA-AGCC-TTCA
* * * *
50336 AGTTTTATTGACGTTGAATTATATATTTTTTCTGAGTATTGT-GTAAAAAATTGTGGAAAATTAT
253 AGTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA-AAT
50400 TTACGGATCAGTTT
317 TTACGGATCAGTTT
* **
50414 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATAACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
*
50479 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAGGACTCCTTGAAATATCTATGTTCATTGTAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * *
50544 CAAATCTCAGCTACATTGGACTTAAGGATTTCTTTTTATGAGCATCTGAATCTTTTTTTGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
** * * *
50609 ATTAAAA-AATATTTTGAAAAAATTAGAAAATCTATATTAGAAGCGTAAAACACCCTTCAAGTTT
196 ATTAAAATAA-ATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGTAAAA-AGCCTTCAAGTTT
* * * *
50673 TATTGACGTTGAATTAAATATTTTTTCTGAGTATTGT-GTAAAAAATTGAGGAAAACTATTTACG
258 TTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA-AATTTACG
50737 GATCAGTTT
322 GATCAGTTT
**
50746 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACTTGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * *
50811 AGCCCCGGCACAAATTCGCATAATTTTTGGCGTAAGGACTCCTTGAAATATCTGTGTTCATTGTA
66 AGCCCCGACAC-AATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTA
*
50876 CCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTGCGATTT
130 CCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTT
* * * * *** * *
50941 AATTAGAAATTAATTCGAAAAAAAAAAGAAAAACAATATTAGAAGTGTTTTAAGCACGTCAA-TA
195 AATTA-AAATAAATTCG-GAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTT
* * * * * *
51005 TTTTCGGCGTTGGATTATATATTTTTTCTGAGTATTGTGGCAAAAAAATTAAGAAAAAAACTTTT
257 TTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGGAAAAAA-TTTA
*
51070 CGGGTCAG-TT
320 CGGATCAGTTT
* * * * *
51080 TTG----A----A-CCAAAATCGTGTACTAACCATCACAGTTTTTTGG-CTAAAACCGCGTTTCG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCAC-GGTTTTTGGACTAAAAACGCGTTCCG
* * * * * * *
51135 G-GGCCCGACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTAAAATATCTATATTCATT-
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCATTG
** * * * * *
51197 TAAGTAAATCTCAGCCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTTTTTTGA
128 T-ACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* *
51262 TTTAATTAAAA-AAATTCGGAAAAAACTAGAAAAACGATATTAGAAGCGTAAAAAAACCTTCAAG
192 TTTAATTAAAATAAATTCGGAAAAAA-TAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTCAAG
* * * *
51326 TTTTTTTGATGTTGAATTATATATTTCTTCTGAGTATTGTGGTAAAAAATTGATGAATAAAA-TT
255 TTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAA-AAAATTT
51390 ACGGATCAGTTT
319 ACGGATCAGTTT
*
51402 TTGCAAAATTTTAGCTGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * *
51467 AACCCCGGCACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTATAC
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * * * *
51532 CAAATCTCAGCTACATTGGACTTAAGGATTTATTTTTACTAGCATTTGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * * ** *
51597 ATTAGAAATTAATTC-GAAAAAAAACAAAAACAATATTTGAAGTGTTTAAAGCACGTCAA-TATT
196 ATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGT-TT
**
51660 TTTTG-CGTTGAATTATATATTTTTTCAAAGTATTGTGGCAAAAAATTGAGGAAAAAAATTTACG
258 TTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG-AAAAAATTTACG
51724 GATCAGTTT
322 GATCAGTTT
* * **
51733 GTGCAGAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCAATCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * *
51798 AGCCCCGGCACAATTCGCATGATTTTCGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAT
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
* * *
51863 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACTAGCATCTGAATCTTGTTGCGATTTA
131 CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
* * * * * ** * *
51928 ATTTGAAATTAATTC-GAAAAAAAACAAAAAC-A-A-T--AAGTGTTTAAAGCACGTCAA-TATT
196 A-TTAAAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGC-CTTCAAGTTTT
* * * * * * *
51986 TATGGCGTTGAATTATATATTTTTTCTAAGTATTGTGGCAAAAAATTAAGGAAAAACTTTTCGGG
259 TTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTACGGA
52051 TCAG-TT
324 TCAGTTT
* * * * * *
52057 TTG----A----A-CCAAAATCGTGTACTAACCATCACAGTTTATTGG-CTCAAACCGCGTTTCG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTT-TTGGACTAAAAACGCGTTCCG
* * * * * * * *
52112 G-GGCCCAACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTGAAATATTTATATTCAGTT
65 GAGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAAATATCTATGTTCA-TT
* * * * * * *
52175 -AAGCAAATCTCAGCCACATTGGATTTAAGGATTTCTTTTTACGAGCATCTTAATCTTGTTTCGA
127 GTACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGA
* * *
52239 TTTAACTAGAAATAAATTCGGAAAAAATGGAAAAAC-A-ATTAGAAGCGTGAAAAGGCCTTCATA
192 TTTAATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGT-AAAAAGCCTTCA-A
** * * *
52302 -TTTTTTTGGTGTTG-A--AT-TA-TTTTTCTGAGTTTTGTGGCAAAAATTTGAGGAAAAACTTT
254 GTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAATTT
** * *
52361 TTGGGTAAGTTT
319 ACGGATCAGTTT
* * * * *
52373 TTGCAAAATTTTAGTCGAAATC--AT-GTAACCATCACGTTTTTCTGG-CAAAAAACGCGTTCAG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTT-TGGACTAAAAACGCGTTCCG
* * * * * * * * ** * * * *
52434 AATCCCTGGCTCAATTTTGCCTGATTTATATCGCAAATACTCCTTGAAATATCCATATTCATCT-
65 GAGCCCCGACACAA-TTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCAT-TG
* * * * * *
52498 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTATACGACCATCTGAATCTTGTTTCGAT
128 TACCAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGAT
* * *
52563 TTAATTAAAAACAAATTCGAAAAAAAAAACTAGAAAAACGATATTAGAAGCGTGAAAAA-CTCTT
193 TTAATT-AAAATAAATTCG---GAAAAAA-TAGAAAAACAATATTAGAAGCGT-AAAAAGC-CTT
* **
52627 TAAGTTTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAAATTGAGGAAAAA
251 CAAGTTTTTTTGACGTTGAATTATATATTTTTTCTGAGTATTGTGGC-AAAAAATTGAGG-AAAA
* * *
52692 AACTTTTCGGGTAAGTTT
314 AA-TTTACGGATCAGTTT
* * * **
52710 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACAGTTTTGGGGCTAAAAACATGTTCCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * * * * * *
52775 AGCCCCGACTCAATTCGCATAATTTTTGGCGTAAAGACTCCTCG-AATGATCGATATTTATCGCA
66 AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAAT-ATCTATGTTCATTGTA
** *
52839 TTAAAT-TGCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
130 CCAAATCT-CAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATT
** * * *
52903 TAATTAGAAATTTATTC-G-AAAAA-AG-AAAACAATATTAGAAGCCTGAAAAGCCTGTCAA-TA
194 TAATTA-AAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGCCT-TCAAGTT
* * * * * *
52963 TTTTTGGCGTTGATTTATATTTTTTTTTTTAGGTATTGTGGCAAAAAATTGAGAAATAAAACTTT
257 TTTTTGACGTTGAATTATATATTTTTTCTGA-GTATTGTGGCAAAAAATTGAGGAA-AAAA-TTT
** * *
53028 TGGGGTCA-ATT
319 ACGGATCAGTTT
* *
53039 TT-C---A----A-CCGAAATCGTGTACTAACCATCACGGTTTTTGG-CTAAAAACGCGTTTCGG
1 TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
* * * * *
53094 -GGCCCGACTCAGTTTTGCATGATTTTTAGCAG-AAAGACTCCTTGAA
66 AGCCCCGACACA-ATTCGCATGATTTTTGGC-GTAAAGACTCCTTGAA
Statistics
Matches: 6412, Mismatches: 1155, Indels: 824
0.76 0.14 0.10
Matches are distributed among these distances:
313 1 0.00
314 16 0.00
315 221 0.03
316 44 0.01
317 38 0.01
318 193 0.03
319 429 0.07
320 249 0.04
321 357 0.06
322 156 0.02
323 267 0.04
324 456 0.07
325 120 0.02
326 88 0.01
327 49 0.01
328 45 0.01
329 218 0.03
330 251 0.04
331 763 0.12
332 640 0.10
333 465 0.07
334 681 0.11
335 126 0.02
336 157 0.02
337 100 0.02
338 35 0.01
339 127 0.02
340 49 0.01
341 9 0.00
342 21 0.00
343 11 0.00
344 17 0.00
345 7 0.00
346 2 0.00
347 1 0.00
348 3 0.00
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (330 bp):
TTGCAAAATTTTAGCCGAAATCGTATACTAACCATCACGGTTTTTGGACTAAAAACGCGTTCCGG
AGCCCCGACACAATTCGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATGTTCATTGTAC
CAAATCTCAGCTACATTGGACTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTTTTCGATTTA
ATTAAAATAAATTCGGAAAAAATAGAAAAACAATATTAGAAGCGTAAAAAGCCTTCAAGTTTTTT
TGACGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTACGGATC
AGTTT
Done.