Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016343.1 Corchorus olitorius cultivar O-4 contig16376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120238

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
676--752
31
2.5
31
100
0
154
53
11
10
24
1.68
5971--5999
3
9.7
3
100
0
58
68
0
0
31
0.89
7937--7988
27
2.0
26
84
3
68
38
0
3
57
1.17
7947--7985
20
2.0
20
94
0
69
38
0
5
56
1.22
13986--14025
14
2.9
13
85
7
53
52
0
2
45
1.14
20623--20680
29
2.0
29
93
0
98
12
15
8
63
1.50
54502--54532
1
31.0
1
100
0
62
100
0
0
0
0.00
64356--64387
1
32.0
1
93
0
55
96
0
3
0
0.20
77265--77318
28
2.0
27
85
3
72
55
1
7
35
1.39
80134--80198
29
2.2
29
91
0
103
60
12
9
18
1.58
85157--85182
1
26.0
1
100
0
52
0
0
0
100
0.00
95016--95054
21
1.9
21
89
5
62
33
0
17
48
1.48
102263--102344
40
2.0
40
97
0
155
31
12
15
40
1.85
104139--104216
40
2.0
40
87
7
115
29
12
17
39
1.87
105589--105618
15
1.9
16
93
6
53
3
26
0
70
1.03
110504--110566
27
2.3
27
94
0
108
44
7
19
28
1.78
114457--114497
20
2.0
20
100
0
82
14
9
14
60
1.57
114703--114760
19
2.9
19
87
5
80
29
22
12
36
1.90
119226--119277
21
2.5
22
84
12
65
42
3
0
53
1.19
119273--119305
13
2.4
14
90
5
50
36
0
15
48
1.45
119239--119294
2
29.5
2
73
22
50
44
1
3
50
1.29

Tables:   1

The End!