genome.fa.s16345.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016345.1 Corchorus olitorius cultivar O-4 contig16378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62930

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--1031	312	3.2	321	83	7	1282	35	16	13	34	1.89
1927--1978	15	3.4	15	68	5	50	42	19	9	28	1.82
1921--2000	31	2.6	31	95	0	142	38	25	8	27	1.85
1942--1993	16	3.3	16	67	5	52	38	26	9	25	1.86
1945--2039	26	3.5	26	85	7	118	34	32	9	23	1.87
2007--2069	31	2.0	31	90	0	99	34	34	6	23	1.81
1976--2076	26	3.7	26	80	12	103	35	31	7	24	1.84
2082--2163	34	2.4	34	85	0	119	40	21	13	24	1.89
2166--2368	26	7.7	26	87	4	282	34	27	13	24	1.93
2166--2368	51	3.9	52	87	4	291	34	27	13	24	1.93
2166--2368	81	2.6	77	88	4	282	34	27	13	24	1.93
2386--2449	31	2.1	31	84	0	83	45	12	17	25	1.83
6675--6706	2	16.0	2	100	0	64	50	0	50	0	1.00
6898--6928	1	31.0	1	100	0	62	100	0	0	0	0.00
11045--11169	25	5.0	25	90	0	196	31	26	20	21	1.98
16044--16095	21	2.4	21	87	3	77	21	3	11	63	1.43
17991--18152	82	2.0	83	95	1	290	24	15	25	34	1.95
40774--40825	25	2.1	25	100	0	104	34	30	9	25	1.88
41728--41799	38	2.0	35	83	8	90	50	2	31	15	1.58
42513--42576	30	2.1	30	100	0	128	46	12	6	34	1.67
42720--42760	21	1.9	22	85	5	57	34	17	7	41	1.77
49438--49467	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49940--50055	59	2.0	59	92	0	196	33	19	12	33	1.90
51158--51194	19	2.0	19	94	5	67	62	0	0	37	0.96
60468--60525	29	2.0	28	83	6	71	25	22	8	43	1.82
61705--61905	99	2.0	103	91	5	329	24	18	24	31	1.98

Tables:   1

The End!