Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016346.1 Corchorus olitorius cultivar O-4 contig16379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60479

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
358--384
13
2.1
13
100
0
54
55
7
7
29
1.55
735--795
30
2.0
30
96
0
113
44
3
24
27
1.69
1922--1955
17
2.0
17
88
0
50
5
17
29
47
1.71
6451--6477
13
2.1
13
100
0
54
55
7
7
29
1.55
9872--9898
13
2.1
13
100
0
54
55
7
7
29
1.55
17932--17994
30
2.1
30
91
5
101
19
14
15
50
1.77
25864--25897
13
2.6
13
85
0
50
26
8
47
17
1.77
26501--26550
24
2.1
24
92
0
82
14
18
38
30
1.89
40197--40276
42
2.0
41
87
9
119
21
26
6
46
1.75
49946--49995
22
2.2
22
79
10
57
14
14
4
68
1.36
50093--50136
19
2.3
19
88
0
61
36
6
11
45
1.67
50128--50181
19
2.7
19
80
5
54
35
5
9
50
1.58
50152--50223
21
3.4
21
72
12
58
37
11
2
48
1.53
50166--50232
20
3.2
20
74
14
64
34
8
1
55
1.40
55334--55374
2
21.0
2
90
5
66
51
0
0
48
1.00
57798--57905
51
2.0
54
92
7
186
26
22
14
36
1.93
58222--58310
33
2.8
33
77
11
80
24
31
28
15
1.96
59261--59353
45
2.2
43
84
7
118
39
18
7
34
1.79

Tables:   1

The End!