Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016353.1 Corchorus olitorius cultivar O-4 contig16386, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130359

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4976--5023
23
2.0
25
84
8
64
58
2
8
31
1.39
21162--21235
31
2.4
31
93
0
130
45
17
13
22
1.83
21661--21717
8
7.1
8
75
15
55
43
0
0
56
0.99
21661--21710
16
3.3
16
78
16
61
44
0
0
56
0.99
22794--22819
13
2.0
13
100
0
52
23
7
23
46
1.78
25744--25791
21
2.3
23
79
17
59
47
6
4
41
1.48
31221--31276
21
2.8
19
86
5
76
30
23
10
35
1.89
36671--36706
17
2.1
17
100
0
72
25
16
30
27
1.97
48609--48649
14
2.6
16
77
18
50
75
7
12
4
1.16
52794--52886
46
2.0
46
93
0
159
50
17
9
22
1.75
60165--60200
4
9.0
4
100
0
72
50
25
0
25
1.50
60709--60764
2
28.0
2
92
0
94
3
46
0
50
1.19
61751--61822
2
36.0
2
83
5
92
45
2
2
48
1.31
61759--61829
34
2.1
34
91
0
115
43
2
4
49
1.36
62228--62335
52
2.1
52
96
0
198
21
26
14
37
1.92
80333--80357
13
1.9
13
100
0
50
84
0
0
16
0.63
83142--83175
6
5.7
6
89
0
50
58
11
29
0
1.33
89706--89807
24
4.2
24
89
3
143
20
42
11
25
1.86
93679--93741
28
2.2
28
91
0
99
39
25
6
28
1.80
95119--95168
23
2.1
24
85
10
68
52
4
22
22
1.64
97618--97757
68
2.1
68
100
0
280
34
21
14
30
1.93
97963--98643
203
3.4
203
93
3
1151
33
20
13
31
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99617--99756
74
1.9
73
88
1
208
33
16
19
30
1.94
119531--119590
30
2.0
30
100
0
120
33
26
13
26
1.93
120866--121056
96
2.0
96
89
4
296
23
27
19
29
1.98

Tables:   1

The End!