Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016355.1 Corchorus olitorius cultivar O-4 contig16388, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7364

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--2664
340
7.8
339
74
12
2238
33
14
17
35
1.89
3212--3389
99
1.8
99
92
1
304
54
1
9
34
1.43
3489--3530
2
21.5
2
81
13
52
47
0
4
47
1.23
5643--5927
31
9.4
31
88
6
415
48
16
12
22
1.80
5643--5910
58
4.5
59
85
10
339
47
17
12
22
1.81
5644--5912
89
3.0
89
93
0
448
48
17
12
22
1.80
6451--6508
22
2.6
22
86
7
91
36
22
22
18
1.95
6452--6523
22
3.3
21
81
11
83
37
25
18
19
1.94
6545--7129
31
19.2
31
88
5
811
45
16
15
23
1.85
6547--7129
92
6.4
93
87
4
825
45
16
15
23
1.85
6993--7033
20
2.0
20
95
0
73
39
21
14
24
1.91
7113--7145
16
2.1
16
94
0
57
48
18
9
24
1.76
7129--7273
31
4.7
31
95
0
254
46
16
13
22
1.82
7063--7207
78
1.9
78
92
2
247
46
15
13
24
1.83
7129--7364
62
3.9
62
81
15
287
45
16
13
23
1.84
6602--7242
246
2.5
259
78
12
364
45
16
15
23
1.85
7253--7293
20
2.0
20
95
0
73
43
19
12
24
1.85
7273--7364
38
2.7
31
75
20
103
44
17
14
23
1.85
7083--7362
93
3.0
93
74
16
276
45
16
14
23
1.84

Tables:   1

The End!