Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016357.1 Corchorus olitorius cultivar O-4 contig16390, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76786

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18031--18088
9
6.8
9
75
11
50
22
37
0
39
1.54
18042--18095
3
18.0
3
76
0
54
25
37
0
37
1.57
18039--18095
24
2.4
24
100
0
114
24
36
0
38
1.56
18040--18074
18
1.9
18
94
0
61
25
37
0
37
1.57
20007--20042
17
2.1
18
94
5
65
58
22
8
11
1.59
24477--24583
54
2.0
54
96
0
196
40
23
10
26
1.86
33155--33217
31
2.0
32
90
3
101
34
26
23
14
1.93
33162--33225
31
2.1
31
84
0
83
39
28
20
12
1.89
35765--35943
97
1.8
97
89
0
277
37
23
7
31
1.83
40547--40587
20
2.0
20
100
0
82
51
4
19
24
1.66
51904--52030
63
2.0
63
98
0
245
23
10
12
53
1.69
57096--57174
37
2.1
38
90
4
124
35
10
18
35
1.85
61984--64570
324
8.1
320
76
9
2084
35
16
14
33
1.89
61977--64570
654
4.1
638
77
9
2229
35
16
14
34
1.89
67983--68014
5
6.4
5
100
0
64
59
0
18
21
1.38
73497--73528
15
2.1
15
94
0
55
25
25
0
50
1.50
73589--73624
15
2.5
15
95
4
65
69
0
0
30
0.89
73586--73625
14
2.9
14
86
13
57
67
0
0
32
0.91
73863--73919
27
2.1
27
87
3
80
21
8
5
64
1.41
74386--75099
322
2.2
320
84
4
864
33
15
17
33
1.92
75124--75880
322
2.3
322
82
5
894
33
15
17
33
1.91
75927--76786
323
2.7
321
90
2
1305
32
15
16
35
1.89

Tables:   1

The End!