Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016359.1 Corchorus olitorius cultivar O-4 contig16392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46132

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4709--4738
11
2.7
11
100
0
60
26
26
26
20
1.99
5344--6490
322
3.5
323
85
3
1396
34
15
15
34
1.90
6542--7800
325
3.9
322
79
8
1265
33
15
15
35
1.89
6542--7769
332
3.7
322
79
9
1250
33
14
15
35
1.89
7887--8465
308
1.9
305
82
5
729
32
14
16
36
1.89
8307--9466
621
1.9
618
83
4
1534
32
14
17
35
1.90
19572--19599
8
3.5
8
100
0
56
14
0
35
50
1.43
19570--19609
16
2.5
17
84
12
57
17
2
30
50
1.59
22901--22937
4
9.2
4
100
0
74
51
0
24
24
1.49
31299--31347
22
2.3
22
85
3
64
42
0
8
48
1.32
31760--31832
29
2.5
29
95
2
128
45
5
24
24
1.74
31874--31967
30
3.3
28
85
8
136
42
5
25
26
1.76
31711--31940
116
2.0
114
90
4
365
35
6
29
29
1.81
45930--45956
12
2.2
12
100
0
54
48
0
0
51
1.00

Tables:   1

The End!