Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016360.1 Corchorus olitorius cultivar O-4 contig16393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74900

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17315--17400
27
3.2
27
94
0
145
27
15
25
31
1.95
27542--27701
83
1.9
83
87
5
234
30
16
15
38
1.89
28684--29016
167
2.0
167
95
1
605
31
13
22
32
1.92
29411--29466
29
1.9
29
85
0
76
32
14
17
35
1.90
32810--32851
19
2.2
19
100
0
84
45
11
21
21
1.84
36782--36823
21
2.0
21
86
9
59
26
4
19
50
1.67
39042--39127
42
2.0
43
88
4
131
31
10
12
45
1.76
42083--42224
63
2.3
63
96
0
257
29
29
14
26
1.95
42288--42409
61
2.0
62
93
1
210
34
9
7
49
1.62
42334--42497
79
2.1
76
92
4
267
34
6
6
52
1.54
42868--42909
17
2.4
17
88
8
57
54
9
35
0
1.33
43759--44061
154
2.0
155
94
0
536
33
12
20
33
1.90
48342--48401
28
2.1
28
87
0
84
26
10
26
36
1.88
63703--63737
14
2.4
14
85
4
52
11
17
11
60
1.59
64977--65056
40
2.0
40
100
0
160
17
15
22
45
1.85
65080--65144
34
1.9
34
93
0
112
24
10
15
49
1.76
74304--74442
43
3.3
43
72
6
158
34
15
5
44
1.70
74294--74464
83
2.1
83
100
0
342
35
12
6
45
1.68

Tables:   1

The End!