Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016361.1 Corchorus olitorius cultivar O-4 contig16394, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37812

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1657--1763
52
2.1
51
87
1
151
57
19
10
13
1.64
4184--4532
191
1.8
192
89
1
558
34
17
6
41
1.75
6901--6957
22
2.6
22
78
10
71
12
21
14
52
1.73
7383--7473
30
3.0
30
93
0
155
21
32
24
20
1.98
10185--10221
6
6.2
6
100
0
74
32
16
51
0
1.45
15517--15562
21
2.2
21
84
0
56
28
17
39
15
1.90
17769--17851
26
3.2
26
66
19
73
10
7
24
57
1.57
19805--19863
30
2.0
30
86
0
82
33
37
8
20
1.83
20091--20176
45
1.9
45
95
0
154
22
4
34
38
1.75
24908--24932
11
2.3
11
100
0
50
0
24
0
76
0.80
25924--25950
7
3.9
7
100
0
54
29
14
25
29
1.95
26296--26333
2
19.5
2
94
5
69
50
0
0
50
1.00
26297--26344
21
2.2
21
88
7
69
47
0
4
47
1.21
36862--37812
322
2.9
333
83
6
1121
34
17
15
32
1.91

Tables:   1

The End!