Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016362.1 Corchorus olitorius cultivar O-4 contig16395, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2552
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Found at i:1862 original size:656 final size:659
Alignment explanation
Indices: 67--2552 Score: 3277
Period size: 656 Copynumber: 3.8 Consensus size: 659
57 AAATTTTGAC
* * *
67 AAAAGCTGACCCGTAAATTTTTTTACCTCAATATCTTGCCACAATACTCTGAAAAAATATATAAT
1 AAAAACTGACCCGAAAATTTTTTTA-CTCAATTTCTTGCCACAATACTCTGAAAAAATATATAAT
* * * * *
132 TCAACGCGAAGAAGATTAAAGGGTTTTTTC-CTCTTCTAATACCGTTTTCTCATTCTATTCCGAT
65 TCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAA
196 TTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATAT
130 TTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATAT
* * * * * *
261 GTCTGAGATTTTGTTTGATGAATACAAATATTTCAAGGGGTATTTCTGCCAAAAATCATGCAAAA
195 GTCTGAGATTTGGTCTGATGAATACAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAA
* * * * *
326 CTGAGTCGGGACTCTGGAACACGTTTTTAGCTAAAAACCATGATGGTTAGTACACTATTTCGGC-
260 CTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTTGGCT
* * *
390 -------T--AAAAACTGACCCG-AAATGTTTTTT--CTCAATTTTTTGCCATAATACTCAGAAA
325 AAAATTTTGCAAAAACTGACCCGAAAAT-TTTTTTACCTCAATTTCTTGCCACAATACTCGGAAA
* * ** ** * * * *
443 AAAAATATAATTCAACGCCAAAAATCTTGACCGGATTTTT-ACGT-TTCTTATATCGTTTTTCCA
389 AAATATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTCAC-TCTTCTAATACCGTTTTCCCA
* * * * *
506 TTTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAAATTCAGATGCTCTTAAAAACGAATCCT
453 TTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATACTCTTAAAAACAAATCCT
* * *
571 TATATCCAATGTGGCTGAGATTTGGTCCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAA
518 TATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAA
*
636 ACTCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTAC
583 AATCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTAC
701 ACGATTTTGGCTAAA
648 ACGA-TTTGGCT--A
716 ATTTTGCAAGAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAAA
1 A------AA-AACTGACCCGAAAATTTTTTTA-CTCAATTTCTTGCCACAATACTCTG-AAAAAA
781 TATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTTTTCACTCTTCTAATACCGTTTTCCCAT
57 TATATAATTCAACGCGAAAAAGATTGAAGGG---TTTTTTCACTCTTCTAATACCGTTTTCCCAT
*
846 TCTTTTCCGAATTTTTTTCTAATTAAATCGAAACAAAATTCAGATTCTCGTAAAAACAAATCCTT
119 TCTTTTCCGAATTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTT
* * *
911 AAATCCAATATGTCTGAGATTTTGT-TCGATGAATACAGATATTTCGAGAAGTCTTTTTGCCAAA
184 AAATCCAATATGTCTGAGATTTGGTCT-GATGAATACAGATATTTCAAGGAGTCTTTTTGCCAAA
*
975 AATCATGC--AACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAATCATGATGGTTAGTAC
248 AATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAACCATGATGGTTAGTAC
*
1038 ACGATTTTGGCTAAAATTTTGCAAAAGCTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACA
313 ACGATTTTGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACA
* *
1103 ATACTCTGAAAAAAACATATAATTCAACGCGAAAAAGATTGAAAGGGTTTTTTCACTCTTCTAAT
378 ATACTC-GGAAAAAATATATAATTCAACGCGAAAAAGATTG-AAGGGTTTTTTCACTCTTCTAAT
** *
1168 ACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTA
441 ACCGTTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATACTCTTA
* * * * * *
1233 AAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTCGATGAATACAGATATCTCAAGGGGT
506 AAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGT
* * ** * * * * *
1298 ATTTCTGCCAAAAATCATGCAAAACTGAGTCGGGACTCTGGAACGCGTTTTTAGCTAAAAACCAT
571 CTTTGTGCCAAAAATCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGT
* *
1363 GATGGTTAGTACACTATTTCGGCT-
636 AATGGTTAGTACACGATTT-GGCTA
* * *
1387 AAAAACTGACCCG-AAATGTTTTTT-CACAATTAT-TTGCCATAATACT-TAGAAAAATTATATA
1 AAAAACTGACCCGAAAAT-TTTTTTACTCAATT-TCTTGCCACAATACTCT-GAAAAAATATATA
* ** ** * * * * * * *
1448 ATTCAACGCTAAAAATCTTGACCGG-ATTTT-ACGCTTCTGATATCGTTTTTCCATTTTTTTCTG
63 ATTCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCG
** * * * *
1511 AATTAATTTCTAATTAAATAGAAACAAAATTCAGA-AGCTCTTAAAAACAAATCCATATATCCAA
128 AATTTTTTTCTAATTAAATCGAAACAAAATTCAGATA-CTCGTAAAAACAAATCCTTAAATCCAA
* * * * * * *
1575 TGTGGCTGAGATTTGGTCAGATGAATATAGTTATTTCAAGGAGTCTTTGTGCCAAAACTCATGCA
192 TATGTCTGAGATTTGGTCTGATGAATACAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCA
** * * * * * *
1640 AAGTTGAGCCGGAGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTT
257 AAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTTG
*
1705 GCTAAAATTTTGCAAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGACACAATACTCGGA
322 GCTAAAATTTTGCAAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCGGA
*
1770 AAAAATATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTTCC
387 AAAAATATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCC
* * * *
1835 ATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTATTAAAAACAAATCC
452 ATTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATACTCTTAAAAACAAATCC
*
1900 TTATATCCAATATGGCTGAGATTTGGTTCGATG-ATAATAGATATTTCGAGGAGTCTTTGTGCCA
517 TTATATCCAATATGGCTGAGATTTGGTTCGATGAAT-ATAGATATTTCAAGGAGTCTTTGTGCCA
1964 AAAATCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGT
581 AAAATCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGT
* *
2029 ACACGATTTTGCAAAAATTTTGC
646 ACACGATTTGGC--------T-A
2052 AAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAAT
1 AAAAACTGACCCGAAAATTTTTTTA-CTCAATTTCTTGCCACAATACTCTGAAAAAATATATAAT
*
2117 CCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAA
65 TCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAA
2182 TTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATAT
130 TTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATAT
* * *
2247 GTCTGAGATTTTGTTTGATGAATACAGATATTTCGAGGAGTCTTTTTGCCAAAAATCATGCAAAA
195 GTCTGAGATTTGGTCTGATGAATACAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAA
*
2312 CTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAATCATGATGGTTAGTACACGATTTTGGCT
260 CTGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTTGGCT
* * *
2377 AAAATTTTGCAAAAGCTGACCCGAAAATTTTTTTACCTCAATATCTTGCCACAATACTCTGAAAA
325 AAAATTTTGCAAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCGGAAAA
* * *
2442 AATATATAATTCAACGCGAAGAAGATTAAAGGGTTTTCTC-CTCTTCTAATACCGTTTTCCCATT
390 AATATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATT
* **
2506 CTATTCCG-ATTTTTTTCTAATTAAATCGAAACAAAATTCAGATACTC
455 CTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATACTC
Statistics
Matches: 1587, Mismatches: 193, Indels: 96
0.85 0.10 0.05
Matches are distributed among these distances:
649 1 0.00
655 6 0.00
656 389 0.25
657 71 0.04
658 115 0.07
659 60 0.04
660 8 0.01
661 180 0.11
662 19 0.01
663 6 0.00
664 16 0.01
665 21 0.01
666 5 0.00
667 85 0.05
668 33 0.02
669 313 0.20
670 5 0.00
671 22 0.01
672 28 0.02
673 12 0.01
674 192 0.12
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (659 bp):
AAAAACTGACCCGAAAATTTTTTTACTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATT
CAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAAT
TTTTTTCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATG
TCTGAGATTTGGTCTGATGAATACAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAAC
TGAGTCGGGGCTCCGGAACGCGTTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTTGGCTA
AAATTTTGCAAAAACTGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCGGAAAAA
ATATATAATTCAACGCGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTC
TTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATACTCTTAAAAACAAATCCTTAT
ATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAAT
CATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTACACG
ATTTGGCTA
Found at i:2207 original size:334 final size:335
Alignment explanation
Indices: 8--2552 Score: 3372
Period size: 335 Copynumber: 7.7 Consensus size: 335
1 TAAACTA
* * *
8 CGTTTTTAGACCAAAAACCGTGATGGTTAGTATACGTATTTTGGACTTAAAATTTTGACAAAAGC
1 CGTTTTTAG-CCAAAAACCATGATGGTTAGTACACG-ATTTTGG-C-TAAAATTTTG-CAAAAAC
* *
73 TGACCCGTAAATTTTTTTACCTCAATATCTTGCCACAATACTCTGAAAAAATATATAATTCAACG
61 TGACCCGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACG
* * * * *
138 CGAAGAAGATTAAAGGGTTTTTTC-CTCTTCTAATACCGTTTTCTCATTCTATTCCGATTTTTTT
126 CGAAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTT
202 TCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGA
191 TCTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGA
* * * * *
267 GATTTTGTTTGATGAATACAAATATTTCAAGGGGTATTTCTGCCAAAAATCATGCAAAACTGAGT
256 GATTTTGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGT
* * *
332 CGGGACTCTGGAACA
321 CGGGGCTCCGGAACG
* * *
347 CGTTTTTAGCTAAAAACCATGATGGTTAGTACACTATTTCGGC--------T--AAAAACTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
* * * * *
402 CG-AAATGTTTTTT--CTCAATTTTTTGCCATAATACTCAGAAAAAAAATATAATTCAACGCCAA
66 CGAAAAT-TTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAA
** ** * * * * * * **
464 AAATCTTGACCGGATTTTT-ACGT-TTCTTATATCGTTTTTCCATTTTTTTCTGAATTAATTTCT
130 AAAGATTGAAGGGTTTTTTCAC-TCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCT
* * * * * * *
527 AATTAAATAGAAACAAAATTCAGATGCTCTTAAAAACGAATCCTTATATCCAATGTGGCTGAGAT
194 AATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGAT
* * * * * ** *
592 TTGGTCCGATGAATATAGATATTTCAAAGAGTCTTTGTGCCAAAACTCATGCAAAGTTGAGCCGG
259 TTTGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGG
657 GGCTCCGGAACG
324 GGCTCCGGAACG
* * *
669 CGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAGAACTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
734 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAAATATATAATTCAACGCGAA
66 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTG-AAAAAATATATAATTCAACGCGAA
799 AAAGATTGAAGGGTTTTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTT
130 AAAGATTGAAGGG---TTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTT
*
864 CTAATTAAATCGAAACAAAATTCAGATTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAG
192 CTAATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAG
* * *
929 ATTTTGTTCGATGAATACAGATATTTCGAGAAGTCTTTTTGCCAAAAATCATGC--AACTGAGTC
257 ATTTTGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTC
992 GGGGCTCCGGAACG
322 GGGGCTCCGGAACG
* * *
1006 CGTTTTTAGCTAAAAATCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAGCTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
*
1071 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAAACATATAATTCAACGCGAA
66 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTG-AAAAAATATATAATTCAACGCGAA
1136 AAAGATTGAAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCT
130 AAAGATTG-AAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCT
1201 AATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGAT
194 AATTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGAT
* * * *
1266 TTTGTTCGATGAATACAGATATCTCAAGGGGTATTTCTGCCAAAAATCATGCAAAACTGAGTCGG
259 TTTGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGG
* *
1331 GACTCTGGAACG
324 GGCTCCGGAACG
* * *
1343 CGTTTTTAGCTAAAAACCATGATGGTTAGTACACTATTTCGGC--------T--AAAAACTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
* * * *
1398 CG-AAATGTTTTTT--CACAATTAT-TTGCCATAATACT-TAGAAAAATTATATAATTCAACGCT
66 CGAAAAT-TTTTTTACCTCAATT-TCTTGCCACAATACTCT-GAAAAAATATATAATTCAACGCG
** ** * * * * * * * **
1458 AAAAATCTTGACCGG-ATTTT-ACGCTTCTGATATCGTTTTTCCATTTTTTTCTGAATTAATTTC
128 AAAAAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTC
* * * * * *
1521 TAATTAAATAGAAACAAAATTCAGA-AGCTCTTAAAAACAAATCCATATATCCAATGTGGCTGAG
193 TAATTAAATCGAAACAAAATTCAGATA-CTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAG
* * * * ** *
1585 A-TTTGGTCAGATGAATATAGTTATTTCAAGGAGTCTTTGTGCCAAAACTCATGCAAAGTTGAGC
257 ATTTTGTTC-GATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGT
*
1649 CGGAGCTCCGGAACG
321 CGGGGCTCCGGAACG
* * *
1664 CGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTTGCTAAAATTTTGCAAAAACTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
* *
1729 CGAAAATTTTTTTACCTCAATTTCTTGACACAATACTCGGAAAAAATATATAATTCAACGCGAAA
66 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAA
* * * **
1794 AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTTCCATTTTTTTCTGAATTAATTTCTAA
131 AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAA
* ** * *
1859 TTAAATCGAAACAAAATTCAGATGCTATTAAAAACAAATCCTTATATCCAATATGGCTGAGATTT
196 TTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTT
* * * ** *
1924 GGTTCGATG-ATAATAGATATTTCGAGGAGTCTTTGTGCCAAAAATCATGCAAAGTTGAGCCGGG
261 TGTTCGATGAAT-ACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGG
1988 GCTCCGGAACG
325 GCTCCGGAACG
* * *
1999 CGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTT-GCAAAAATTTTGCAAAAACTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
*
2063 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATCCAACGCGAAA
66 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAA
2128 AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAA
131 AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAA
2193 TTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTT
196 TTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTT
* * *
2258 TGTTTGATGAATACAGATATTTCGAGGAGTCTTTTTGCCAAAAATCATGCAAAACTGAGTCGGGG
261 TGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGG
2323 CTCCGGAACG
326 CTCCGGAACG
* * *
2333 CGTTTTTAGCTAAAAATCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAGCTGACC
1 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
* *
2398 CGAAAATTTTTTTACCTCAATATCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAG
66 CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAA
* * *
2463 AAGATTAAAGGGTTTTCTC-CTCTTCTAATACCGTTTTCCCATTCTATTCCG-ATTTTTTTCTAA
131 AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAA
2526 TTAAATCGAAACAAAATTCAGATACTC
196 TTAAATCGAAACAAAATTCAGATACTC
Statistics
Matches: 1939, Mismatches: 215, Indels: 110
0.86 0.09 0.05
Matches are distributed among these distances:
320 7 0.00
321 186 0.10
322 247 0.13
323 8 0.00
324 46 0.02
325 19 0.01
326 5 0.00
327 19 0.01
329 2 0.00
330 1 0.00
331 19 0.01
332 23 0.01
333 92 0.05
334 365 0.19
335 497 0.26
336 6 0.00
337 218 0.11
338 33 0.02
339 146 0.08
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (335 bp):
CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACC
CGAAAATTTTTTTACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAA
AAGATTGAAGGGTTTTTTCACTCTTCTAATACCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAA
TTAAATCGAAACAAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTT
TGTTCGATGAATACAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGG
CTCCGGAACG
Done.