Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016365.1 Corchorus olitorius cultivar O-4 contig16398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 187455
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:1338 original size:656 final size:652
Alignment explanation
Indices: 1--4042 Score: 4131
Period size: 656 Copynumber: 6.2 Consensus size: 652
* * * *
1 TTTTGCCATAATACTCAGAAAAATATATAATTCAATGCCAAAAATCTTGACCGGATTTTT-ACGT
1 TTTTGCCACAATACTCAGAAAAATATATAATTCAACGCCAAAAATATTGA-CGGATTTTTCACGC
* * *
65 TTCTTATATC-TTTTTCCATTTTTTTCTGAATTAATTTCTAATTTAATAGAAACAAAATTCAGAT
65 TTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGAT
* * * *
129 GCTCTTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTCCGATGAATATAGATATTTC
130 GCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTC
* * **
194 AAAGAGTCTTTGTGCCAAAACTCATGCAAAGTTGAGCCGAAGCTCCGGAACGCGTTTTTAGCCAA
195 AAGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAA
* *
259 AAACCGTAATGG-TAGTATACGATTTTGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTTTTA
260 AAACCGTAATGGTTAGTACACGATTTTGGCT-AAA---TGCAAAAACTGACCCGAAAAGTTTTTA
* * * * *
323 CCTC-AATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAAAAAATTTAAAGGT
321 CCTCAAATTT-TTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGGT
* **
387 TTTTTCACTCTTCTAATATCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAATTAAATCGAAACA
385 TTTTTCACTCTTCTAATATCGTTTTTCCATT-TTTTCCGAATTAATTTCTAATTAAATCGAAACA
* * * * **
452 AAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGGGATTT-TTTTTATGAATA
449 AAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATA
* * * *
516 CAGATATTTCAAGGAGTCTTTCTGCGAAAAATCATGCAAAACTGAGTCGGGGCTCTGGAACGCGT
514 TAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCGT
* * * *
581 TTTTAGCTAAAAATCATGATGGTTAGTACACTATTTTGGC-T-AAAAACTGACCCGAAATGTTTT
579 TTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCATCAAAAACTGACCCGAAAAGTTTT
*
644 TTCTCATTT
644 TTCTCAATT
* * * * *
653 TTTTGTCATAATACTTAGAAAAAATATATAATTCAACGCCAAAAATCTTGACCGGATTTTT-ATG
1 TTTTGCCACAATACTCAG-AAAAATATATAATTCAACGCCAAAAATATTGA-CGGATTTTTCACG
*
717 CTTCTGATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
64 CTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
** * *
782 TGCTATTAAAAACAAATCCTTATATCCAATATGGCTGAGATTCGGTTCGATGAATATAGATATTT
129 TGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * *
847 CAAGGAGTCTTTGTGCCAAAACTCAAGCAAAGTTGAGCCGGGGCTCCGGAACACGTTTTTAGCCA
194 CAAGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCA
*
912 AAAACCGTAATGGTTAGTACACGATTTTGGCTGAAATTTTGCAAAAACTGACCTGAAAAGTTTTT
259 AAAACCGTAATGGTTAGTACACGATTTTGGCT-AAA---TGCAAAAACTGACCCGAAAAGTTTTT
977 ACCTCAAATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGGT
320 ACCTCAAATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGG-
* * *
1042 TTTTTTCACTCTTATAATAACG-TTTTCTCATTCTTTTCCGAATT-TTTTACTAATTAAATCGAA
384 TTTTTTCACTCTTCTAATATCGTTTTTC-CATT-TTTTCCGAATTAATTT-CTAATTAAATCGAA
* * * * * *
1105 ACAAGATTCAGGTTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTTGATGA
446 ACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGA
* * * **
1170 ATATAGATATTTGAAGGAGTCTTTCTGC-AAAAATCATGCAAAACTAAGTCGGGGCTCCAAAACG
511 ATATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACG
* * * * * *
1234 CGATTTTAGCTAAAAACCATGATGGTTTGTACACGATTTCGGC-T-AAAAACTGACTCGAAATGT
576 CGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCATCAAAAACTGACCCGAAAAGT
1297 TTTTTCTCAATT
641 TTTTTCTCAATT
* *
1309 TTTTGCCATAATACTCAGAAAATATATATAATTCAACGCCAAAAATCTTGATCGGATTTTT-ACG
1 TTTTGCCACAATACTCAGAAAA-ATATATAATTCAACGCCAAAAATATTGA-CGGATTTTTCACG
* *
1373 CTTCTGATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAAATTCAGA
64 CTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
* * * * *
1438 TGCTCTTAAAAACAAATCCATATATCCAATGTGGCTGAGATTTGGTCCGATGAATATAGATATTT
129 TGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* *
1503 CAAAGAGTCTTTGTGCCAAAACTCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCA
194 CAAGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCA
* * *
1568 AAAACCGTAATGATTAGTACACGATTTTGGATAAAATTTTGCAAAAACTGACCCGAAAAGATTTT
259 AAAACCGTAATGGTTAGTACACGATTTTGGCT-AAA---TGCAAAAACTGACCCGAAAAGTTTTT
* * * * *
1633 ACCTCGATTTTTTGCCACAATACTCTGGAAAAAATATATAATTCAACGCCAAGAAGATTGAAGGG
320 ACCTCAAATTTTTGCCACAATACTC-AGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGG
* * * * *
1698 TTTTTTCACTCTTCTAATATCGTTTTTCCATTGTTTTCCGAATTTATTTATAGTCAAATCGAAGC
384 TTTTTTCACTCTTCTAATATCGTTTTTCCATT-TTTTCCGAATTAATTTCTAATTAAATCGAAAC
* * * * * * *
1763 AAGATTCAAATTCTCATAAAAACAAATCCTTAAAT-CAATATGACTGAGATATT-GTTTGATAAA
448 AAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGAT-TTGGTTCGATGAA
* *
1826 TATAGAAATTT-AAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCAGAACGC
512 TATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGC
* ** * * * * *
1890 GTTATTAGCCAAAAACTGTGATGTTTATTACATGATTTCGGCTAAAATTATGCAAAAACAGACCC
577 GTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGC-------AT-CAAAAACTGACCC
* *
1955 GAAAAG-TTTATCTCATTT
634 GAAAAGTTTTTTCTCAATT
* * * **** * *
1973 TTTTGCCACAATACTTAGAATAAATATTTAATTCAAGTGTTTGAAA-ATTGAAGGGTTTTTCACG
1 TTTTGCCACAATACTCAGAA-AAATATATAATTCAA-CGCCAAAAATATTGACGGATTTTTCACG
* * * * * * * *
2037 TTTCTAATAGCG-TTTTCCA-TTTTTCCTGAATTTATTTTTAATTAAATTGAAACAAGA-TCTAA
64 CTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTC-AG
* * * * *
2099 ATCCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTCGTTAGATG-ATCATAGATAT
128 ATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAAT-ATAGATA-
* ** * * * ** *
2163 TTTCAAGGAGTCTTTATGCCAAAAAC-CA-GCTAAA-CT-ATTTCGAGTCCCCAAAACACGTTTT
191 TTTCAAGGAGTCTTTGTGCC-AAAACTCATGC-AAAGCTGA-GCCGGGGCTCCGGAACGCGTTTT
* * * * *
2224 TAGCAAAAAAAACCGTGATGGTTAGTACAAGATTTTGGC----T--AAAAGCTAACCCG-AAA-T
253 TAGC--CAAAAACCGTAATGGTTAGTACACGATTTTGGCTAAATGCAAAAACTGACCCGAAAAGT
** ** * * *
2281 TTAAATTTCTAAATTTTTTGCCACAATATTCAGATAAAAATATATAATTTAATGCCAAAAA-ACT
316 TTTTACCTC-AAA-TTTTTGCCACAATACTCAGA-AAAAATATATAATTCAACGCCAAAAACA-T
** * * * *
2345 TGACCGGATTTTT-ACGCTTCTTATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAA
377 TGAAGGGTTTTTTCACTCTTCTAATATCGTTTTTCCA-TTTTTTCCGAATTAATTTCTAATTAAA
* *
2409 TCGAAACAAAATTCAGATGCTCTTAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTC
441 TCGAAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTC
* * * * **
2474 GATGAATATAAATATTTCAAGGAGTCTTTGTGCTAAAACTCAAGCAAAGTTGAGTCGGGGCTCCG
506 GATGAATATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCG
* * * *
2539 GACCGCGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTTGCTAAAATTTTGCAAAAAC
571 GAACGCGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGC----A---T-CAAAAAC
*
2604 TGACCCGAAAAGTTTTTACATCAATT
628 TGACCCGAAAAGTTTTTTC-TCAATT
* * * * *
2630 TTTTGCCACAATACTCATAACAAATATATAATTCAACGCCAAAAAGATTAAAGGGTTTTTTTCAC
1 TTTTGCCACAATACTCAGAA-AAATATATAATTCAACGCCAAAAATATT-GACGG-ATTTTTCAC
* * * * * * *
2695 TCTTATAATACCGTTTTCCCATTCTTTTCCGAACTT-TTTTCTAATTAAATCGAAACAAAATTCA
63 GCTTCTAATATCGTTTTTCCATTTTTTTCTGAA-TTAATTTCTAATTAAATCGAAACAAAATTCA
* * * *
2759 GATTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTTGATGAATATAGATAT
127 GATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * * * *
2824 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGACTCCGGAACGCGTTTTTAGC
192 TTCAAGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGC
* * * * * * *
2889 TAAAAACC---AT-GATGGTACACTATTTCGGC----T--AAAAACTGACCCGAAATGTTTTT-T
257 CAAAAACCGTAATGGTTAGTACACGATTTTGGCTAAATGCAAAAACTGACCCGAAAAGTTTTTAC
* * * ** *
2943 CTCAATTTTTTGCCATAATACTTAGAAAAAATATATAATTCAACGCCAAAAATC-TTGACCGGAT
322 CTCAAATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-CATTGAAGGGTT
* * * *
3007 TTTT-ACGCTTCTGATATCGTTTTCCCAATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAA
386 TTTTCACTCTTCTAATATCGTTTTTCC-ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAA
** **
3071 AATTCAGATGCTATTAAAAACAAATCCTTATTTCCAATATGGCTGAGATTTGGTTCGATGAATAT
450 AATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATAT
* * * * ** *
3136 AGTTATTTCAAGGAGTCTTTGTGCCAAAACTCAAGCAAAGTTGAGCCGGGGCTCCGGAACGCGTT
515 AGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCGTT
* *
3201 TTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACCCGAA
580 TTTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGC----A---T-CAAAAACTGACCCGAA
* * *
3266 AAGTTTTTACCACAATC
637 AAGTTTTT-TCTCAATT
* * * *
3283 TTTTGCCGCAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGTTTTTTACAC
1 TTTTGCCACAATACTCAG-AAAAATATATAATTCAACGCCAAAAATATTG-ACGGATTTTT-CAC
* * * * * * * ** *
3348 TCTTATAATACCGTTTTCCCATTCTTTTCCGATTTTTTTTCTAATTAAATCGAAACAAGATTCAG
63 GCTTCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAG
* * * * *
3413 ATTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTTGATGAACATAGATATT
128 ATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATT
* * * * * *
3478 TCAAGGAGTCTTTTTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGGTTTTAGCT
193 TCAAGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGCC
* * * *
3543 AAAAACCATGATGGTTAGTACACGATTTCGGC----T--AAAAACTGACCCGAAAA-TTTTT-TC
258 AAAAACCGTAATGGTTAGTACACGATTTTGGCTAAATGCAAAAACTGACCCGAAAAGTTTTTACC
* * * * * * * *
3600 TTAAGTTTTTGCCACCATACTCATAAAAAATATATAATTCAACACCAAAAATATTGACGGGATTT
323 TCAAATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGGTTTT
* * *
3665 TT-ACGCTTCTGATATCGTTTTTCCATTTCTTTCCGAATTGATTTCTAATTAAATCGAAACAAAA
388 TTCACTCTTCTAATATCGTTTTTCCATTT-TTTCCGAATTAATTTCTAATTAAATCGAAACAAAA
* * ** * * *
3729 TACAGATGCTTGTAAAAACAAATCCTTGTATCCATTGTGGATGAGATTTGGTTCGATGAATATAG
452 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAG
* * * ** * * *
3794 ATATTTCAAGGAGT-TTGTATGGAAAAAACCGTGCAAAACTGAGTCGAGGCACCGAAACGCGTTT
517 ATATTTCAAGGAGTCTT-TCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCGTTT
* * * * * * *
3858 TTAGCCAAAAA-CA-G-T-G--A-TGCCCGATTTTAGC-T-AAAAATTGACACGAAAAATCTTTT
581 TTAGCCAAAAACCATGATGGTTAGTACACGATTTTGGCATCAAAAACTGACCCGAAAAGTTTTTT
3914 CTCAATT
646 CTCAATT
* * * *
3921 TTTTGCCACAATACTAAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGTG-TTTTTCACC
1 TTTTGCCACAATACTCAG-AAAAATATATAATTCAACGCCAAAAATATTGACG-GATTTTTCACG
* * * *
3985 CTTCTAATATCCTTTTTCCATTTATTTTCAGAAATAATTTGTAATTAAATCGAAACAA
64 CTTCTAATATCGTTTTTCCATTT-TTTTCTGAATTAATTTCTAATTAAATCGAAACAA
4043 CACAATTTCA
Statistics
Matches: 2962, Mismatches: 349, Indels: 173
0.85 0.10 0.05
Matches are distributed among these distances:
636 21 0.01
637 35 0.01
638 53 0.02
639 19 0.01
641 1 0.00
649 11 0.00
650 1 0.00
652 32 0.01
653 676 0.23
654 315 0.11
655 347 0.12
656 862 0.29
657 153 0.05
658 3 0.00
659 28 0.01
660 30 0.01
661 112 0.04
662 115 0.04
663 38 0.01
664 89 0.03
665 21 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (652 bp):
TTTTGCCACAATACTCAGAAAAATATATAATTCAACGCCAAAAATATTGACGGATTTTTCACGCT
TCTAATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATG
CTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCA
AGGAGTCTTTGTGCCAAAACTCATGCAAAGCTGAGCCGGGGCTCCGGAACGCGTTTTTAGCCAAA
AACCGTAATGGTTAGTACACGATTTTGGCTAAATGCAAAAACTGACCCGAAAAGTTTTTACCTCA
AATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGGTTTTTTC
ACTCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCA
GATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
TTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
CAAAAACCATGATGGTTAGTACACGATTTTGGCATCAAAAACTGACCCGAAAAGTTTTTTCTCAA
TT
Found at i:2390 original size:988 final size:963
Alignment explanation
Indices: 1--4042 Score: 3892
Period size: 988 Copynumber: 4.1 Consensus size: 963
* * * * * *
1 TTTTGCCATAATACTCAG-AAAAATATATAATTCAATGCCAAAAATCTTGACCGGATTTTT-ACG
1 TTTTGCCACAATACTTAGAAAAAATATATAATTCAACG-CAAAAA-ATTGA-AGGGTTTTTCACG
* * * * * * * *
64 TTTCTTATATCTTTTTCCATTTTTTTCTGAATTAATTTCTAATTTAATAGAAACAAAATTCAGAT
63 TTTCTAATAACGTTTTCCA-TTTTTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGAT
* * * * * * **
129 GCTCTTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTCCGATGAATATAGATATTTC
127 CCTCGTAAAAACAAATCCTTAAATCCAATATGGTTGAGATTTCGTTAGATGAATATAGATATTTC
* * * * ** ** *
194 AAAGAGTCTTTGTGCC-AAAACTCATGCAAAGT-TGAGCCGAAGCTCCGGAACGCGTTTTTAGCC
192 AAGGAGTCTTTATGCCAAAAAC-CA-GCAAACTAT--GTCGGGGCTCCAAAACGCGTTTTTAGCA
* *
257 AAAAACCGTAATGG-TAGTATACGATTTTGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTTT
253 AAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAA----G------CTGACCCG-AAATTTTT
* * * * * * *
321 TACCTCAATTTCTTGCCACAATACTCTGAAAAAATATATAATTCAACGCGAAAAAAATTTAAAGG
307 T--CTAAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAACTTGAACGG
* * * **
386 TTTTTTCACTCTTCTAATATCGTTTTCCCATTCTTTTCCGAATTTTTTTCTAATTAAATCGAAAC
370 ATTTTT-ACGCTTCTTATATCGTTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCGAAAC
* * * * **
451 AAAATTCAGATACTCGTAAAAACAAATCCTTAAATCCAATATGTCTGGGATTT-TTTTTATGAAT
434 AAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAAT
* * * *
515 ACAGATATTTCAAGGAGTCTTTCTGCGAAAAATCATGCAAAACTGAGTCGGGGCTCTGGAACGCG
499 ATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCG
* * * * *
580 TTTTTAGCTAAAAATCATGATGGTTAGTACACTATTTTGGCTAAAAACTGACCCGAAATG-TTTT
564 TTTTTAGCCAAAAACCATAATGGTTAGTACACGATTTTGGCTAAAAACTGACCCGAAAAGATTTT
** * * * * * ** **
644 TTCTCATTTTTTTGTCATAATACTTAGAAAAAATATATAATTCAACGCCAAAAATCTTGACCGGA
629 ACCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGA
* * *
709 TTTTTA-TGCTTCTGATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACA
694 TTTTTACT-CTTCTAATATCGTTTTTCCA-TTTTTTCCGAATTTATTTCTAATTAAATCGAAACA
* * *
773 AAATTCAGATGCT-ATTAAAAACAAATCCTTATATCCAATATGGCTGAGATTCGGTTCGATGAAT
757 AAATTCAGATGCTCA-TAAAAACAAATCCTTAAATCCAATATGACTGAGATT-TGTTCGATGAAT
* * * ** * *
837 ATAGATATTTCAAGGAGTCTTTGTGCCAAAACTCAAGCAAAGTTGAGCCGGGGCTCCGGAACACG
820 ATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCG
* * * *
902 TTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTTGGCTGAAATTTTGCAAAAACTGACCTG
885 TTTTTAGCCAAAAACCGTGAT-GTTA-TACATGATTTCGGCT-AAA-TTTGCAAAAACTGACCCG
* *
967 AAAAGTTTTTACCTCAAAT
946 AAAAG-TTTTATCTCAATT
*
986 TTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAACATTGAAGGGTTTTTTTCAC
1 TTTTGCCACAATACTTAGAAAAAATATATAATTCAACG-CAAAAA-ATTGAAGGG--TTTTTCAC
*
1051 -TCTTATAATAACGTTTTCTCATTCTTTTCC-GAATTT-TTTACTAATTAAATCGAAACAAGATT
62 GT-TTCTAATAACGTTTTC-CA-T-TTTTCCTGAATTTATTT-CTAATTAAATCGAAACAAGATT
* * * *
1113 CAGGTTCTCGTAAAAACAAATCCTTAAATCCAATAT-GTCTGAGATTTTGTTTGATGAATATAGA
122 CAGATCCTCGTAAAAACAAATCCTTAAATCCAATATGGT-TGAGATTTCGTTAGATGAATATAGA
* * * * *
1177 TATTTGAAGGAGTCTTTCTG-CAAAAATCATGCAAAACTAAGTCGGGGCTCCAAAACGCGATTTT
186 TATTTCAAGGAGTCTTTATGCCAAAAACCA-GC-AAACTATGTCGGGGCTCCAAAACGCGTTTTT
* * * * * * *
1241 AGCTAAAAACCATGATGGTTTGTACACGATTTCGGCTAAAAACTGACTCGAAATGTTTTTTCTCA
249 AGCAAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAAGCTGACCCGAAA--TTTTTTCTAA
* * * *
1306 ATTTTTTGCCATAATACTCAGAAAATATATATAATTCAACGCCAAAAATCTTGATCGGATTTTTA
312 ATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAACTTGAACGGATTTTTA
* * * * *
1371 CGCTTCTGATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATAGAAACAAAATTCA
377 CGCTTCTTATATCGTTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCA
* * * * *
1436 GATGCTCTTAAAAACAAATCCATATATCCAATGTGGCTGAGATTTGGTCCGATGAATATAGATAT
442 GATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATAT
* * ** *
1501 TTCAAAGAGTCTTTGTGCCAAAACTCATGCAAAGTTGAGCCGGGGCTCCGGAACGCGTTTTTAGC
507 TTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * *
1566 CAAAAACCGTAATGATTAGTACACGATTTTGGATAAAATTTTGCAAAAACTGACCCGAAAAGATT
572 CAAAAACCATAATGGTTAGTACACGATTTTGG--------CT--AAAAACTGACCCGAAAAGATT
* *
1631 TTACCTCGATTTTTTGCCACAATACTC-TGGAAAAAATATATAATTCAACGCCAAGAAGATTGAA
627 TTACCTCAATTTTTTGCCACAATACTCAT--AAAAAATATATAATTCAACGCCAAAAAGATTGAA
* * * *
1695 GGGTTTTTTCACTCTTCTAATATCGTTTTTCCATTGTTTTCCGAATTTATTTATAGTCAAATCGA
690 GGGATTTTT-ACTCTTCTAATATCGTTTTTCCATT-TTTTCCGAATTTATTTCTAATTAAATCGA
* * * * * *
1760 AGCAAGATTCAAATTCTCATAAAAACAAATCCTTAAAT-CAATATGACTGAGATATTGTTTGATA
753 AACAAAATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATATGACTGAGAT-TTGTTCGATG
* *
1824 AATATAGAAATTT-AAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCAGAAC
817 AATATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAAC
* * *
1888 GCGTTATTAGCCAAAAACTGTGATGTTTATTACATGATTTCGGCTAAAATTATGCAAAAACAGAC
882 GCGTTTTTAGCCAAAAACCGTGATG-TTA-TACATGATTTCGGCT-AAATT-TGCAAAAACTGAC
*
1953 CCGAAAAG-TTTATCTCATTT
943 CCGAAAAGTTTTATCTCAATT
* * * ***
1973 TTTTGCCACAATACTTAGAATAAATATTTAATTCAAGTGTTTGAAAATTGAAGGGTTTTTCACGT
1 TTTTGCCACAATACTTAGAAAAAATATATAATTCAA-CG-CAAAAAATTGAAGGGTTTTTCACGT
* * * *
2038 TTCTAATAGCGTTTTCCATTTTTCCTGAATTTATTTTTAATTAAATTGAAACAAGA-TCTAAATC
64 TTCTAATAACGTTTTCCATTTTTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTC-AGATC
*
2102 CTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTCGTTAGATG-ATCATAGATATTTT
128 CTCGTAAAAACAAATCCTTAAATCCAATATGGTTGAGATTTCGTTAGATGAAT-ATAGATA-TTT
* * * * *
2166 CAAGGAGTCTTTATGCCAAAAACCAGCTAAACTATTTCGAGTCCCCAAAACACGTTTTTAGCAAA
191 CAAGGAGTCTTTATGCCAAAAACCAGC-AAACTATGTCGGGGCTCCAAAACGCGTTTTTAGC--A
* *
2231 AAAAACCGTGATGGTTAGTACAAGATTTTGGCTAAAAGCTAACCCGAAATTTAAATTTCTAAATT
253 AAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAAGCTGACCCGAAATTT---TTTCTAAATT
* * * *
2296 TTTTGCCACAATATTCAGATAAAAATATATAATTTAATGCCAAAAAACTTGACCGGATTTTTACG
315 TTTTGCCACAATACTCAGA-AAAAATATATAATTCAACGCCAAAAAACTTGAACGGATTTTTACG
* * *
2361 CTTCTTATATCGTTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
379 CTTCTTATATCGTTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
* * *
2426 TGCTCTTAAAAACAAATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAATATAAATATTT
444 TGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTT
* * * ** *
2491 CAAGGAGTCTTTGTGCTAAAACTCAAGCAAAGTTGAGTCGGGGCTCCGGACCGCGTTTTTAGCCA
509 CAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCA
* * *
2556 AAAACCGTAATGGTTAGTACACGATTTTTGCTAAAATTTTGCAAAAACTGACCCGAAAAGTTTTT
574 AAAACCATAATGGTTAGTACACGATTTTGGC--------T--AAAAACTGACCCGAAAAGATTTT
* * *
2621 ACATCAATTTTTTGCCACAATACTCATAACAAATATATAATTCAACGCCAAAAAGATTAAAGGGT
629 ACCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGG-
* * * *
2686 TTTTTTCACTCTTATAATACCGTTTTCCCATTCTTTTCCGAACTTT-TTTCTAATTAAATCGAAA
693 ATTTTT-ACTCTTCTAATATCGTTTTTCCATT-TTTTCCGAA-TTTATTTCTAATTAAATCGAAA
* * * *
2750 CAAAATTCAGATTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTTGATGAA
755 CAAAATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATATGACTGAGA-TTTGTTCGATGAA
* * *
2815 TATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGACTCCGGAACGC
819 TATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGC
* * * *
2880 GTTTTTAGCTAAAAACCATGATGGTACAC-T-ATTTCGGC------T--AAAAACTGACCCGAAA
884 GTTTTTAGCCAAAAACCGTGATGTTATACATGATTTCGGCTAAATTTGCAAAAACTGACCCGAAA
* *
2935 TGTTTTTTCTCAATT
949 AGTTTTATCTCAATT
* * * *
2950 TTTTGCCATAATACTTAGAAAAAATATATAATTCAACGCCAAAAATCTTGACCGGATTTTT-ACG
1 TTTTGCCACAATACTTAGAAAAAATATATAATTCAACG-CAAAAA-ATTGA-AGGGTTTTTCACG
* * * * * *
3014 CTTCTGATATCGTTTTCCCAATTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAAATTCAGA
63 TTTCTAATAACGTTTT-CC-ATTTTTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGA
* ** ** * * * *
3079 TGCTATTAAAAACAAATCCTTATTTCCAATATGGCTGAGATTTGGTTCGATGAATATAGTTATTT
126 TCCTCGTAAAAACAAATCCTTAAATCCAATATGGTTGAGATTTCGTTAGATGAATATAGATATTT
* * * **
3144 CAAGGAGTCTTTGTGCC-AAAACTCAAGCAAAGT-TGAGCCGGGGCTCCGGAACGCGTTTTTAGC
191 CAAGGAGTCTTTATGCCAAAAAC-C-AGCAAACTAT--GTCGGGGCTCCAAAACGCGTTTTTAGC
* *
3207 CAAAAACCGTAATGGTTAGTACACGATTTTGGCTAAAATTTTGCAAAAACTGACCCGAAAAGTTT
252 AAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAAA----G------CTGACCCG-AAA-TTT
* * * * *
3272 TTACCACAATCTTTTGCCGCAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGA-TTGAAG
305 TTTCTA-AATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-ACTTGAAC
* * * **
3336 GGTTTTTTACAC-TCTTATAATACCGTTTTCCCATTCTTTTCCGATTTTTTTTCTAATTAAATCG
368 GGATTTTTACGCTTCTTAT-AT--CGTTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCG
* * * * *
3400 AAACAAGATTCAGATTCTCGTAAAAACAAATCCTTAAATCCAATATGTCTGAGATTTTGTTTGAT
430 AAACAAAATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGAT
* *
3465 GAACATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAA
495 GAATATAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAA
* * * *
3530 CGCGGTTTTAGCTAAAAACCATGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AAA-A
560 CGCGTTTTTAGCCAAAAACCATAATGGTTAGTACACGATTTTGGCTAAAAACTGACCCGAAAAGA
** * * * * * *
3593 TTTTTTCTTAAGTTTTTGCCACCATACTCATAAAAAATATATAATTCAACACCAAAAATATTGAC
625 TTTTACCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAA
* * *
3658 GGGATTTTTACGCTTCTGATATCGTTTTTCCATTTCTTTCCGAATTGATTTCTAATTAAATCGAA
690 GGGATTTTTACTCTTCTAATATCGTTTTTCCATTT-TTTCCGAATTTATTTCTAATTAAATCGAA
* ** ** * *
3723 ACAAAATACAGATGCTTGTAAAAACAAATCCTTGTATCCATTGTGGA-TGAGATTTGGTTCGATG
754 ACAAAATTCAGATGCTCATAAAAACAAATCCTTAAATCCAATAT-GACTGAGATTT-GTTCGATG
* * * ** * * *
3787 AATATAGATATTTCAAGGAGT-TTGTATGGAAAAAACCGTGCAAAACTGAGTCGAGGCACCGAAA
817 AATATAGATATTTCAAGGAGTCTT-TCTGCAAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAA
* ** * *
3851 CGCGTTTTTAGCCAAAAACAGTGATG-----CCCGATTT----T--A---GCTAAAAATTGACAC
881 CGCGTTTTTAGCCAAAAACCGTGATGTTATACATGATTTCGGCTAAATTTGC-AAAAACTGACCC
*
3902 GAAAAATCTTT-TCTCAATT
945 GAAAAGT-TTTATCTCAATT
* * **
3921 TTTTGCCACAATACTAAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGTGTTTTTCACCC
1 TTTTGCCACAATACTTAGAAAAAATATATAATTCAACG-C-AAAAAATTGAAGGGTTTTTCACGT
* * * * * * *
3986 TTCTAATATCCTTTTTCCATTTATTTTCAGAAATAATTTGTAATTAAATCGAAACAA
64 TTCTAATA-ACGTTTTCCA-TT-TTTCCTGAATTTATTTCTAATTAAATCGAAACAA
4043 CACAATTTCA
Statistics
Matches: 2571, Mismatches: 375, Indels: 235
0.81 0.12 0.07
Matches are distributed among these distances:
969 1 0.00
970 7 0.00
971 83 0.03
972 44 0.02
973 8 0.00
974 169 0.07
975 6 0.00
976 77 0.03
977 203 0.08
978 204 0.08
979 114 0.04
980 11 0.00
981 1 0.00
982 10 0.00
983 78 0.03
984 55 0.02
985 55 0.02
986 125 0.05
987 146 0.06
988 659 0.26
989 292 0.11
990 145 0.06
991 76 0.03
992 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (963 bp):
TTTTGCCACAATACTTAGAAAAAATATATAATTCAACGCAAAAAATTGAAGGGTTTTTCACGTTT
CTAATAACGTTTTCCATTTTTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATCCTC
GTAAAAACAAATCCTTAAATCCAATATGGTTGAGATTTCGTTAGATGAATATAGATATTTCAAGG
AGTCTTTATGCCAAAAACCAGCAAACTATGTCGGGGCTCCAAAACGCGTTTTTAGCAAAAAACCG
TGATGGTTAGTACACGATTTTGGCTAAAAGCTGACCCGAAATTTTTTCTAAATTTTTTGCCACAA
TACTCAGAAAAAATATATAATTCAACGCCAAAAAACTTGAACGGATTTTTACGCTTCTTATATCG
TTTTCCCATTCTTTTCCGAATTAATTTCTAATTAAATCGAAACAAAATTCAGATGCTCGTAAAAA
CAAATCCTTAAATCCAATATGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
GTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCATAATG
GTTAGTACACGATTTTGGCTAAAAACTGACCCGAAAAGATTTTACCTCAATTTTTTGCCACAATA
CTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGATTTTTACTCTTCTAATATCGTT
TTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAAATTCAGATGCTCATAAAAACAA
ATCCTTAAATCCAATATGACTGAGATTTGTTCGATGAATATAGATATTTCAAGGAGTCTTTCTGC
AAAAAATCAAGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGTTAT
ACATGATTTCGGCTAAATTTGCAAAAACTGACCCGAAAAGTTTTATCTCAATT
Found at i:7592 original size:57 final size:57
Alignment explanation
Indices: 7499--7612 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
7489 ATCAATGGGG
* *
7499 TGGAATGGATATTTATTGGGATGATGCTGATGATTGATCTTCAACACATTTATATGC
1 TGGAATGGATATTTACTGGGATGATGCTGATAATTGATCTTCAACACATTTATATGC
7556 TGGAATGGATATTTACT-GGACTGATGCTGATAATTGATCTTCAACACATTTATATGC
1 TGGAATGGATATTTACTGGGA-TGATGCTGATAATTGATCTTCAACACATTTATATGC
7613 ATCTATTTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
56 3 0.06
57 51 0.94
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (57 bp):
TGGAATGGATATTTACTGGGATGATGCTGATAATTGATCTTCAACACATTTATATGC
Found at i:8615 original size:6 final size:6
Alignment explanation
Indices: 8601--8633 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
8591 AGGAATTGGA
*
8601 AGAA-G AGAAGC AGAAGG AGAAGG AGAAGG AGAA
1 AGAAGG AGAAGG AGAAGG AGAAGG AGAAGG AGAA
8634 TTCAGAGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.55, C:0.03, G:0.42, T:0.00
Consensus pattern (6 bp):
AGAAGG
Found at i:18568 original size:23 final size:23
Alignment explanation
Indices: 18542--18594 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
18532 AATTATGAAG
** *
18542 AGATATTCTTAAAAAAGTTATTA
1 AGATATTCCAAAAAAAATTATTA
*
18565 AGATA-ACCAAAAAAAATTATTA
1 AGATATTCCAAAAAAAATTATTA
18587 AGATATTC
1 AGATATTC
18595 GATAGATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.53, C:0.08, G:0.08, T:0.32
Consensus pattern (23 bp):
AGATATTCCAAAAAAAATTATTA
Found at i:21778 original size:21 final size:19
Alignment explanation
Indices: 21721--21778 Score: 62
Period size: 21 Copynumber: 2.9 Consensus size: 19
21711 TTGTTTAGCA
*
21721 ACTGTATAGATGAGATTAC
1 ACTGTACAGATGAGATTAC
* * *
21740 ACTGTACAGATTAAATTAGGT
1 ACTGTACAGATGAGATTA--C
21761 ACTGTACAGATGAGATTA
1 ACTGTACAGATGAGATTA
21779 TTAGAGCAGC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 15 0.48
21 16 0.52
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAC
Found at i:27226 original size:30 final size:31
Alignment explanation
Indices: 27131--27279 Score: 158
Period size: 31 Copynumber: 4.8 Consensus size: 31
27121 GCACGAGACA
* ** ** *
27131 TGCCACGTGTTACTTTTTGACACACATGGCA
1 TGCCACGTGTCACTTTTTGGTACATGTGGCG
*
27162 TGACACGTGTCACTTATTT-GTACATGTGGCG
1 TGCCACGTGTCACTT-TTTGGTACATGTGGCG
*
27193 TGCCATGTGTCACTTTTTGGTACATGT-GCG
1 TGCCACGTGTCACTTTTTGGTACATGTGGCG
* *
27223 TGCCACGTGTCGCTTTTTGGTACATGTGGTG
1 TGCCACGTGTCACTTTTTGGTACATGTGGCG
* * *
27254 TGCCACATGTCGCTTTTTGGCACATG
1 TGCCACGTGTCACTTTTTGGTACATG
27280 GCATGCCACG
Statistics
Matches: 101, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
30 31 0.31
31 67 0.66
32 3 0.03
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (31 bp):
TGCCACGTGTCACTTTTTGGTACATGTGGCG
Found at i:27246 original size:61 final size:60
Alignment explanation
Indices: 27153--27290 Score: 179
Period size: 61 Copynumber: 2.3 Consensus size: 60
27143 CTTTTTGACA
* **
27153 CACATGGCATGACACGTGTCACTTATTTGTACATGTGGCGTGCCATGTGTCACTTTTTGG
1 CACATGGCATGCCACGTGTCACTTATTTGTACATGTGGCGTGCCACATGTCACTTTTTGG
* * * * *
27213 TACATGTGCGTGCCACGTGTCGCTT-TTTGGTACATGTGGTGTGCCACATGTCGCTTTTTGG
1 CACATG-GCATGCCACGTGTCACTTATTT-GTACATGTGGCGTGCCACATGTCACTTTTTGG
27274 CACATGGCATGCCACGT
1 CACATGGCATGCCACGT
27291 CGGATACCGT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
60 18 0.27
61 48 0.73
ACGTcount: A:0.16, C:0.23, G:0.27, T:0.34
Consensus pattern (60 bp):
CACATGGCATGCCACGTGTCACTTATTTGTACATGTGGCGTGCCACATGTCACTTTTTGG
Found at i:35218 original size:13 final size:13
Alignment explanation
Indices: 35194--35229 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
35184 TTATATTTAC
35194 AATTATATTAATAT
1 AATTA-ATTAATAT
35208 AATTAATTAATAT
1 AATTAATTAATAT
35221 AATTTAATT
1 AA-TTAATT
35230 CTTAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATTAATTAATAT
Found at i:41168 original size:19 final size:19
Alignment explanation
Indices: 41128--41164 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
41118 AATTTTTAAG
41128 TAAAAATATAATATATAAA
1 TAAAAATATAATATATAAA
*
41147 TAAAAATTTAATAT-TAAA
1 TAAAAATATAATATATAAA
41165 ATAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TAAAAATATAATATATAAA
Found at i:73697 original size:24 final size:24
Alignment explanation
Indices: 73526--73689 Score: 292
Period size: 24 Copynumber: 6.8 Consensus size: 24
73516 TAACCCTGGA
* *
73526 ATGCCTCCAAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
*
73550 ATGCCTCCCAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
*
73574 ATGCCTCCCAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
73598 ATGCCACCCAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
73622 ATGCCACCCAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
73646 ATGCCACCCAACAACATGGGCGGG
1 ATGCCACCCAACAACATGGGCGGG
73670 ATGCCACCCAACAACATGGG
1 ATGCCACCCAACAACATGGG
73690 AGGAATGCAG
Statistics
Matches: 138, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 138 1.00
ACGTcount: A:0.29, C:0.33, G:0.28, T:0.10
Consensus pattern (24 bp):
ATGCCACCCAACAACATGGGCGGG
Found at i:74419 original size:32 final size:32
Alignment explanation
Indices: 74378--74443 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
74368 TTTGAGCGTT
74378 ATTCCTGTCAATGGATTGGAGCTTGCCTAAAC
1 ATTCCTGTCAATGGATTGGAGCTTGCCTAAAC
74410 ATTCCTGTCAATGGATTGGAGCTTGCCTAAAC
1 ATTCCTGTCAATGGATTGGAGCTTGCCTAAAC
74442 AT
1 AT
74444 GCGTCTGCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (32 bp):
ATTCCTGTCAATGGATTGGAGCTTGCCTAAAC
Found at i:76179 original size:12 final size:12
Alignment explanation
Indices: 76164--76194 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
76154 GTTTTCTTTC
76164 TTTTTGCCTCCT
1 TTTTTGCCTCCT
76176 TTTTTGCCTCCT
1 TTTTTGCCTCCT
76188 TTTTTGC
1 TTTTTGC
76195 TCTTTTGTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.29, G:0.10, T:0.61
Consensus pattern (12 bp):
TTTTTGCCTCCT
Found at i:83141 original size:59 final size:60
Alignment explanation
Indices: 83047--83173 Score: 177
Period size: 59 Copynumber: 2.1 Consensus size: 60
83037 GGCTAATTGC
* * *
83047 TCAAATAAGGGCCTAACATTTGTCAAAATACTCAAATAAGGG-TCGGATC-TTTAATTTGG
1 TCAAATAAGAGCCTAACATTTGCCAAAATACTCAAATAAGGGCCCGG-TCTTTTAATTTGG
* *
83106 TCAAATAAGAGCCTAACGTTTGCCAAAATATTCAAATAAGGGCCCGGTCTTTTAATTTGG
1 TCAAATAAGAGCCTAACATTTGCCAAAATACTCAAATAAGGGCCCGGTCTTTTAATTTGG
*
83166 CCAAATAA
1 TCAAATAA
83174 AGGTCTAATA
Statistics
Matches: 60, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
59 40 0.67
60 20 0.33
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (60 bp):
TCAAATAAGAGCCTAACATTTGCCAAAATACTCAAATAAGGGCCCGGTCTTTTAATTTGG
Found at i:83188 original size:2 final size:2
Alignment explanation
Indices: 83181--83219 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
83171 TAAAGGTCTA
83181 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
83220 GATTCAATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:89161 original size:322 final size:319
Alignment explanation
Indices: 88317--89848 Score: 1680
Period size: 320 Copynumber: 4.8 Consensus size: 319
88307 ACCATGATGG
* * * * * * *
88317 TAAAAA-TGA-CCAAAAAGATTTTTCCTCAATTTTTGGCAAAAACACTCATAAAAATATATATAA
1 TAAAAACTGACCCGAAAAG-TTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAA-ATATATAA
* * *
88380 TTCAACGCCAAAAAGATTGGA-GGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTTCTG
64 TTCAACGCCAAAAAGATT-GATGGGCTTTTCACGCTTCTAATATCGTTTTTC-TATTTTTTTCCG
* * *
88444 AATTAATTTCTAATTAAATCGAAACAAGATTCTGATGCACGTAAAAACAAATCCTTAAATCCAAT
127 AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAAT
* * * ** * *
88509 GTGACCT-AGATTTGATTAGACT-AATAA-AGATATTTCAAGGAGTCTCAGCACCAAAAACCATG
192 GTG-GCTGAGATTTGGTTCGA-TGAA-AATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATG
* * * * * * * * * *
88571 AAAAACAGAG-CTGTGACCCCAGAAGGCGTTTTTAGTCAAAATCCGTGA--CATACACGATTTTG
254 CAAAACTGAGTC-GGGACTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGTATACACGATTTCG
88633 GC
318 GC
* * * *
88635 TGAAAACCGACCC-AAAAATTTTTATCTCAATTTTTTGCCACAATATTCAGAAAAAATATATAAT
1 TAAAAACTGACCCGAAAAGTTTTT-TCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
* * * *
88699 TTAATGCCAAAAAGATTGATGGGATTTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTTTTCCG
65 TCAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTTC---TATTTTTTTCCG
* *
88764 AATTAATTTCAAATTAAATCGAAACAAGATTGAGATGCTCG-AAAAACCAAATCCTTATATCCAA
127 AATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-CAAATCCTTATATCCAA
*
88828 TATGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCA
191 TGTGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCA
* * * *
88893 AAATTGAGTTGGGGCTCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTATACACGATTTCGG
256 AAACTGAGTCGGGACTCCGGAACGCGTTTTTAGCCAAAAACCGTGAT-G-TATACACGATTTCGG
88958 C
319 C
* * * *
88959 TAAAAACGGACCCGAAAAGTTTTTTCCTCAAATTTTTGCCAAAAATACTTAGAAAAAATATATAA
1 TAAAAACTGACCCGAAAAGTTTTTT-CTCAATTTTTTGCC-ACAATACTCAGAAAAAATATATAA
*
89024 TTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC-ATTTTTTTCCGAA
64 TTCAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTTCCGAA
* * * * * *
89088 TTAATTTCAAATTAAGA-CGAAACAAGATTGAGATGCTCGAAAAAACAAATCCATATATTCAATA
129 TTAATTTCTAATTAA-ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATG
* * * * * * *
89152 TGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGCCTGTACGCCAAAAAGCTTGCAAA
193 TGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAA
* * * *
89217 ACTGAGTCCGGGCCT-CGGAATGCGTTTTTTGCCCAAAAACCATGATG--TACACGATTTTCGGC
258 ACTGAGT-CGGGACTCCGGAACGCGTTTTTAG-CCAAAAACCGTGATGTATACACGA-TTTCGGC
* ** * * *
89279 TAAAATCTGACCCGAAATTTTTTTTTCTGAATTTTTTGTCACAATACTCAGAAAAAATTTATAAT
1 TAAAAACTGACCCGAAA-AGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAAT
* * * * * *
89344 TCAACACCAAAAAGATTGATGGGCTTTTCACGCTTTTAATATCATTTTCCAATTTTTATCCGAAT
65 TCAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTTCCGAAT
* * *
89409 TAATTTCTAATTAAATCGAAACAAGATTCATATGCTTGTAAAAACAAATCCTTATATGCAATGTG
130 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTG
* * *
89474 GCTGACATTTGGTT---TG---AT-GA-A--T--AGGAGTCTTTGCGCCAAAAATAATGCAAAAT
195 GCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAAC
* * *
89527 TGAGTCGGGACTCGGGAACACGTTTTTAGCCAAAAACCGTGATTGTTAGTACACGGTTTCGGC
260 TGAGTCGGGACTCCGGAACGCGTTTTTAGCCAAAAACCGTGA-TG-TA-TACACGATTTCGGC
***
89590 TAAAAACTGATTGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
1 TAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
* *
89655 CAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTTCCGAAT
66 CAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTTCTA-TTTTTTTCCGAAT
* * * * * *
89720 TAATTTTTAATTAAATTGAAACAAGATTCAGATGCTCGTAAAAACAAATACTTAAATCGAACGTG
130 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTG
* * * * * **
89785 GCTGGGATTTTGTTCGATGAATATAGATATTTCAAGGAGTATTTACGTTAAAAATCATGCAAAA
195 GCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA
89849 ACAAAAAAAA
Statistics
Matches: 1025, Mismatches: 144, Indels: 85
0.82 0.11 0.07
Matches are distributed among these distances:
307 18 0.02
308 43 0.04
310 91 0.09
311 99 0.10
312 7 0.01
313 2 0.00
314 4 0.00
317 6 0.01
318 63 0.06
319 116 0.11
320 260 0.25
321 7 0.01
322 145 0.14
323 48 0.05
324 26 0.03
325 22 0.02
326 68 0.07
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (319 bp):
TAAAAACTGACCCGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATT
CAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTAATATCGTTTTTCTATTTTTTTCCGAATT
AATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGG
CTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAACT
GAGTCGGGACTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGTATACACGATTTCGGC
Found at i:89647 original size:642 final size:624
Alignment explanation
Indices: 88361--89823 Score: 1680
Period size: 642 Copynumber: 2.3 Consensus size: 624
88351 GGCAAAAACA
* * *
88361 CTCATAAAAATATATATAATTCAACGCCAAAAAGATTGGAGGACTTTTCACGCTTTTAATATCGT
1 CTCAGAAAAA-ATATATAATTCAACGCCAAAAAGATT-GAGGGCTTTTCACGCTTCTAATATCGT
* * *
88426 TTTTCATATTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCTGATGCACGTAAAAA
64 TTTTC--ATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA
* * * * *
88491 CAAATCCTTAAATCCAATGTGACCT-AGATTTGATTAGACT-AATAAAGATATTTCAAGGAGTCT
127 CAAATCCTT-AATTCAATGTGA-CTGAGATTTGGTTCGA-TGAATATAGATATTTCAAGGAGCCT
* * * *
88554 CAGCACCAAAAACCATGAAAAACAGAGCTGTGACCCCAGAAGGCGTTTTTAGTCAAAATCCGTGA
189 CAGCACCAAAAACCATGAAAAACAGAGCCGTGACCCCAGAAGGCGTTTTTAGCCAAAAACCATGA
*
88619 CATACACGATTTTGGCTGAAAACCGACCCAAAAATTTTTATCTCAATTTTTTGCCACAATATTCA
254 CATACACGATTTTGGCTGAAAACCGACCCAAAAATTTTTATCTCAATTTTTTGCCACAATACTCA
* ** *
88684 GAAAAAATATATAATTTAATGCCAAAAAGATTGATGGGATTTTCACGCTTCTAATATCGTTTTTC
319 GAAAAAATATATAATTCAACACCAAAAAGATTGATGGGATTTTCACGCTTCTAATATCGATTTTC
*** * *
88749 TTTTTTTTTTTTCCGAATTAATTTCAAATTAAATCGAAACAAGATTGAGATGCTCGAAAAACCAA
384 -TCAATTTTTATCCGAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGCTCGAAAAACCAA
*
88814 ATCCTTATATCCAATATGGCTGAGATTTGGTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCG
448 ATCCTTATATCCAATATGGCTGACATTTGGTT--ATG--AATAGATA-TT-AAGGAGTCTTTGCG
* * * * *
88879 CCAAAAATCATGCAAAATTGAGTTGGGGCTCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTT
507 CCAAAAATAATGCAAAATTGAGTCGGGACTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTT
88944 ATACACGATTTCGGCTAAAAACGGACCCGAAAAGTTTTTTCCTCAAATTTTTG
572 ATACACGATTTCGGCTAAAAACGGACCCGAAAAGTTTTTTCCTCAAATTTTTG
88997 CCAAAAATACTTAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCT
1 -C-----T-C--AGAAAAAATATATAATTCAACGCCAAAAAGATTGA-GGGCTTTTCACGCTTCT
* *
89062 AATATCGTTTTTCATTTTTTTCCGAATTAATTTCAAATTAAGA-CGAAACAAGATTGAGATGCTC
56 AATATCGTTTTTCATTTTTTTCCGAATTAATTTCTAATTAA-ATCGAAACAAGATTCAGATGCTC
* * *
89126 GAAAAAACAAATCCATATATTCAATATGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGG
120 GTAAAAACAAATCCTTA-ATTCAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGG
* * * * * * * * * * *
89191 AGCCTGTA-CGCCAAAAAGCTTGCAAAACTGAGTCCG-GGCCTCGGAATGCGTTTTTTGCCCAAA
184 AGCCT-CAGCACCAAAAACCATGAAAAACAGAG-CCGTGACCCCAGAAGGCGTTTTTAG-CCAAA
** * ** * * *
89254 AACCATGATGTACACGATTTTCGGCT-AAAATCTGACCCGAAATTTTTTTTTCTGAATTTTTTGT
246 AACCATGACATACACGATTTT-GGCTGAAAA-CCGACCC-AAAAATTTTTATCTCAATTTTTTGC
* * *
89318 CACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGATTGATGGGCTTTTCACGCTTTTAA
308 CACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATGGGATTTTCACGCTTCTAA
* * *
89383 TATC-ATTTTC-CAATTTTTATCCGAATTAATTTCTAATTAAATCGAAACAAGATTCATATGCTT
373 TATCGATTTTCTCAATTTTTATCCGAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGCTC
* *
89446 GTAAAAA-CAAATCCTTATATGCAATGTGGCTGACATTTGGTT-TG-AT-GA-A-T-AGGAGTCT
438 G-AAAAACCAAATCCTTATATCCAATATGGCTGACATTTGGTTATGAATAGATATTAAGGAGTCT
*
89504 TTGCGCCAAAAATAATGCAAAATTGAGTCGGGACTCGGGAACACGTTTTTAGCCAAAAACCGTGA
502 TTGCGCCAAAAATAATGCAAAATTGAGTCGGGACTCCGGAACACGTTTTTAGCCAAAAACCGTGA
* * * *** *
89569 TTGTTAGTACACGGTTTCGGCTAAAAACTGATTGGAAAAGTTTTTT-CTCAATTTTTTG
567 TGGTTA-TACACGATTTCGGCTAAAAACGGACCCGAAAAGTTTTTTCCTCAAATTTTTG
89627 CCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGATGGGCTTTTCACGCTTCTA
1 --------CTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGA-GGGCTTTTCACGCTTCTA
* * *
89692 ATATCGTTTTCCCATTTTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTC
57 ATATCGTTTT-TCA-TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
* * * * * *
89757 GTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCGATGAATATAGATATTTCAAGG
120 GTAAAAACAAATCCTTAATTC-AATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGG
89822 AG
184 AG
89824 TATTTACGTT
Statistics
Matches: 707, Mismatches: 87, Indels: 70
0.82 0.10 0.08
Matches are distributed among these distances:
629 63 0.09
630 89 0.13
631 133 0.19
632 2 0.00
634 1 0.00
635 2 0.00
636 2 0.00
637 2 0.00
639 2 0.00
641 4 0.01
642 213 0.30
643 37 0.05
644 69 0.10
645 88 0.12
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (624 bp):
CTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGAGGGCTTTTCACGCTTCTAATATCGTTT
TTCATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
TCCTTAATTCAATGTGACTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGCCTCAGCACC
AAAAACCATGAAAAACAGAGCCGTGACCCCAGAAGGCGTTTTTAGCCAAAAACCATGACATACAC
GATTTTGGCTGAAAACCGACCCAAAAATTTTTATCTCAATTTTTTGCCACAATACTCAGAAAAAA
TATATAATTCAACACCAAAAAGATTGATGGGATTTTCACGCTTCTAATATCGATTTTCTCAATTT
TTATCCGAATTAATTTCAAATTAAATCGAAACAAGATTCAGATGCTCGAAAAACCAAATCCTTAT
ATCCAATATGGCTGACATTTGGTTATGAATAGATATTAAGGAGTCTTTGCGCCAAAAATAATGCA
AAATTGAGTCGGGACTCCGGAACACGTTTTTAGCCAAAAACCGTGATGGTTATACACGATTTCGG
CTAAAAACGGACCCGAAAAGTTTTTTCCTCAAATTTTTG
Found at i:90512 original size:336 final size:329
Alignment explanation
Indices: 89909--91009 Score: 1455
Period size: 323 Copynumber: 3.3 Consensus size: 329
89899 AGTTGAAATA
* *
89909 TTTTCTCG-TTTTAAATATCATTTTTCT-ATTTTTTTTCCGACTCTATTTCTTATTAAATCGAAA
1 TTTTCACGCTTTT-AATATCATTTTTCTAATTTTTTTTCCGAAT-TATTTCTTATTAAATCGAAA
* *
89972 CAATATTCAGATGCTCGTAAAAACAAACCCTTAAATCTAATGTGGCTGAGAGCCTAAGATTGGTT
64 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCT-AGATTGGTT
*
90037 AGATGAATATAGATATTTCAAGGAGTC-TTCTGCCAAAAATCATTCAAAACTGAGCCGGGGCCCC
128 AGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC
*
90101 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCC
193 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGA-CA
* *
90166 GAATTTTTTTTTTTCTGAATTTTTTTCTACAATACTCAGAAATTTTTTTTAATTCAACACCAAAA
257 GAA--TTTTTTTTTCTGAATTTTTTTC-ACAATACTCAGAAA-ATTTTATAATTCAACACCAAAA
90231 AGATTGATGGTC
318 AGATTGATGGTC
90243 TTTTCACGCTTTTAAATATCATTTTTCTAATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAA
1 TTTTCACGCTTTT-AATATCATTTTTCTAATTTTTTTTCCGAAT-TATTTCTTATTAAATCGAAA
*
90308 CAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTT
64 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCT-AGATTGGTT
90373 AGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC
128 AGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC
90438 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACAA
193 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGAC-A
* *
90503 GAATTTTTTTTT-TGAATTTTTTGTCACAATACTCAGAAAAATTTATAATTCAACAGCAAAAAGA
257 GAATTTTTTTTTCTGAATTTTTT-TCACAATACTCAGAAAATTTTATAATTCAACACCAAAAAGA
90567 TTGATGGTC
321 TTGATGGTC
*
90576 TTTTCACGATTTTAATATCATTTTT-TCAA-TTTTTTTCCGAATTAATTTCTTATTAAATCGAAA
1 TTTTCACGCTTTTAATATCATTTTTCT-AATTTTTTTTCCGAATT-ATTTCTTATTAAATCGAAA
* * * * * * *
90639 CAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCT--GA--C-A-TTTGGTTT
64 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTAGATTGGTTA
* * * * *
90698 GATGAATATAGATATTTCAAGGAGTCTTTGC-ACCAAAAATCATGCAAAATTGAGTC-GGGACTC
129 GATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC
* * * * * * *
90761 GGGAACGCGTTTTTAG-CCAAAAACCGTGATGGTTAGTACACG-GTTTCGGCTAAAAACTGATCG
193 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGA-CA
*** * * *
90824 GAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACACCAAAAAG
257 GAATTTTTTTTTCTGAATTTTTT-TCACAATACTCAG-AAAATTTTATAATTCAACACCAAAAAG
*
90889 ATTGATGGGC
320 ATTGATGGTC
* * ** * *
90899 TTTTCACGCTTCTAATATC-GTTTTCCCATTTTTTGTCCGAATTAGTTT-TTAATTAAATTGAAA
1 TTTTCACGCTTTTAATATCATTTTTCTAATTTTTTTTCCGAATTA-TTTCTT-ATTAAATCGAAA
* * * *
90962 CAAGATTCAAATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTG
64 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTG
91010 GGATTTTGTT
Statistics
Matches: 697, Mismatches: 54, Indels: 42
0.88 0.07 0.05
Matches are distributed among these distances:
321 25 0.04
322 55 0.08
323 136 0.20
324 57 0.08
325 2 0.00
327 1 0.00
329 2 0.00
330 1 0.00
331 74 0.11
332 14 0.02
333 42 0.06
334 31 0.04
335 30 0.04
336 126 0.18
337 101 0.14
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (329 bp):
TTTTCACGCTTTTAATATCATTTTTCTAATTTTTTTTCCGAATTATTTCTTATTAAATCGAAACA
AGATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTAGATTGGTTAGA
TGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGA
AACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACAGAAT
TTTTTTTTCTGAATTTTTTTCACAATACTCAGAAAATTTTATAATTCAACACCAAAAAGATTGAT
GGTC
Found at i:91920 original size:320 final size:325
Alignment explanation
Indices: 91144--91953 Score: 902
Period size: 320 Copynumber: 2.5 Consensus size: 325
91134 TCTCGTTTTC
* * * * * * *
91144 AATATCATTTTTCTATTTTTTTTCCAAATCT-ATTTCTTATTAAATCGAAACAATATTCAGATGC
1 AATATCATATTTCCAATTTTTTTCCGAAT-TAATTTCTAATTAAATCGAAACAAGATTCAAATGC
** ** * * *
91208 TCGTAAAAACAAATCCTTAAATGTAATTTGGCTGAGAGCCTGAGATTGGTTAGATGAATGTAGAT
65 TCGTAAAAACAAATCCTTAAATCAAACATGGCT--GA--C--A-TTTGGTTCGATGAATATAGAT
** *
91273 ATTTCAAGGAGTCTTTCTGCCAAAAAT-ATGCAAAACTGTGCCGGGATCCCCGAAACGCGTTTTT
123 ATTTCAAGGAGTCTTTC-GCCAAAAATCATGCAAAACTAAGCCGGGATCCCCGAAACACGTTTTT
* * * * *** * *
91337 AGCCCCAAAACCATGATGGTTAGTATACGATTTTCGACTAAAATCTGACCCGAATTTTTTTTTTG
187 AGCCCAAAAACCATGATGGTTAGTACACGAGTTTCGACTAAAAACTGACCCGAAAGCTTTTTCTC
* * *
91402 AATTTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGTTTGATGGTCTTTT
252 AATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATGGTCTTTT
*
91467 CACGCTTTT
317 CACGCTTCT
*
91476 AATATCATATTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCT
1 AATATCATATTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCT
* * * * *
91541 TGTAAAAACAAATCCTTATATCCAATATGGCTGACATTTGGTTTGATGAATATAGATATTTCAAG
66 CGTAAAAACAAATCCTTAAATCAAACATGGCTGACATTTGGTTCGATGAATATAGATATTTCAAG
* * * * * *
91606 GAGTCTTTGCGCCAAAAATCATGCAAAATTAAGTCGGGA-CTCGGGAACACGTTTTTAG-TCAAA
131 GAGTCTTT-CGCCAAAAATCATGCAAAACTAAGCCGGGATCCCCGAAACACGTTTTTAGCCCAAA
* * * *
91669 AACCGTGATGGTTAGTACACG-GTTTCGGCTAAAAACTGATCGGAAAAGCTTTTTCTCAA-TTTT
195 AACCATGATGGTTAGTACACGAGTTTCGACTAAAAACTGACCCG-AAAGCTTTTTCTCAATTTTT
* *
91732 TTGCCACAATACTCAGAAAAAATATATAATTCATCGCCAAAAAGATTGATGGGT-TTTTCACGCT
259 TTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGAT-GGTCTTTTCACGCT
91796 TCT
323 TCT
* * *
91799 AATATCGT-TTTCC-A-TTTTTTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAAATGCT
1 AATATCATATTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCT
* * ** *
91861 CGTAAAAACAAATTCTTAAATCAAACGTGGCTGGGATTTTGTTCGATGAATATAGATATTTCAAG
66 CGTAAAAACAAATCCTTAAATCAAACATGGCTGACATTTGGTTCGATGAATATAGATATTTCAAG
* **
91926 GAGTATTTACGTTAAAAATCATGCAAAA
131 GAGTCTTT-CGCCAAAAATCATGCAAAA
91954 ACAAAAAATA
Statistics
Matches: 413, Mismatches: 60, Indels: 22
0.83 0.12 0.04
Matches are distributed among these distances:
320 124 0.30
321 1 0.00
322 5 0.01
323 85 0.21
324 35 0.08
325 58 0.14
326 17 0.04
328 1 0.00
330 2 0.00
331 1 0.00
332 84 0.20
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (325 bp):
AATATCATATTTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATGCT
CGTAAAAACAAATCCTTAAATCAAACATGGCTGACATTTGGTTCGATGAATATAGATATTTCAAG
GAGTCTTTCGCCAAAAATCATGCAAAACTAAGCCGGGATCCCCGAAACACGTTTTTAGCCCAAAA
ACCATGATGGTTAGTACACGAGTTTCGACTAAAAACTGACCCGAAAGCTTTTTCTCAATTTTTTT
GCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGATGGTCTTTTCACGCTTCT
Found at i:92402 original size:882 final size:885
Alignment explanation
Indices: 90243--92454 Score: 3936
Period size: 887 Copynumber: 2.5 Consensus size: 885
90233 ATTGATGGTC
*
90243 TTTTCACGCTTTTAAATATCATTTTTCTAATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAA
1 TTTTCTCG-TTTTAAATATCATTTTTCT-ATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAA
90308 CAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTT
64 CAATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTT
90373 AGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCC
129 AGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGG-CCC
*
90438 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGA-CA
193 CGAAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCC
*
90502 AGAATTTTTTTTTTGAATTTTTTGTCACAATACTCAG-AAAAATTTATAATTCAACAGCAAAAAG
258 A-AATTTTTTTTTTGAATTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAG
*
90566 ATTGATGGTCTTTTCACGATTTTAATATCATTTTTTCAATTTTTTTCCGAATTAATTTCTTATTA
322 ATTGATGGTCTTTTCACGATTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTTATTA
90631 AATCGAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGT
387 AATCGAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGT
*
90696 TTGATGAATATAGATATTTCAAGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGACTC
452 TTGATGAATATAGATATTTCAAGGAGTCTTTGCACCAAAAATCATGCAAAATTAAGTCGGGACTC
*
90761 GGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCGGA
517 GGGAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCGGA
* *
90826 AAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAATTATATAATTCAACACCAAAAAGAT
582 AAAGCTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGAT
*
90891 TGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTGTCCGAATTAGTTTTTAATTAAA
647 TGATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTGTCCGAATTAATTTTTAATTAAA
*
90956 TTGAAACAAGATTCAAATGCTCGTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTC
712 TTGAAACAAGATTCAAATGCTCGTAAAAACAAATACTTAAATCAAACGTGGCTGGGATTTTGTTC
*
91021 GATGAATATAGATATTTCAAGGATTATTTACGTTAAAAATCATGCAAAAACAAAAAAAATAATAT
777 GATGAATATAGATATTTCAAGGAGTATTTACGTTAAAAATCATGCAAAAAC-AAAAAAATAATAT
91086 TTTCGGCTAAAAATACACAATTCAAAGCAAAAAAAAGTTGAAATA
841 TTTCGGCTAAAAATACACAATTCAAAGCAAAAAAAAGTTGAAATA
* *
91131 TTTTCTCGTTTTCAATATCATTTTTCTATTTTTTTTCCAAATCTATTTCTTATTAAATCGAAACA
1 TTTTCTCGTTTTAAATATCATTTTTCTATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAACA
* *
91196 ATATTCAGATGCTCGTAAAAACAAATCCTTAAATGTAATTTGGCTGAGAGCCTGAGATTGGTTAG
66 ATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAG
* * *
91261 ATGAATGTAGATATTTCAAGGAGTCTTTCTGCCAAAAAT-ATGCAAAACTGTGCCGGGATCCCCG
131 ATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGG-GCCCCG
* * *
91325 AAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTATACGATTTTCGACTAAAATCTGACCCGA
195 AAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCCAA
*
91390 ATTTTTTTTTTGAATTTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGTT
260 ATTTTTTTTTTGAA-TTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGAT
* * *
91455 TGATGGTCTTTTCACGCTTTTAATATCATATTTCCAATTTTTTTCCGAATTAATTTCTAATTAAA
324 TGATGGTCTTTTCACGATTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTTATTAAA
* * *
91520 TCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCTTATATCCAATATGGCTGACATTTGGTTT
389 TCGAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTT
*
91585 GATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATTAAGTCGGGACTCGG
454 GATGAATATAGATATTTCAAGGAGTCTTTGCACCAAAAATCATGCAAAATTAAGTCGGGACTCGG
*
91650 GAACACGTTTTTAGTCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCGGAAA
519 GAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCGGAAA
* *
91715 AGCTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCATCGCCAAAAAGATTG
584 AGCTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTG
*
91780 ATGGGTTTTTCACGCTTCTAATATCGTTTT-CCA-TTTTT-TCCGAATTAATTTTTAATTAAATT
649 ATGGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTGTCCGAATTAATTTTTAATTAAATT
*
91842 GAAACAAGATTCAAATGCTCGTAAAAACAAATTCTTAAATCAAACGTGGCTGGGATTTTGTTCGA
714 GAAACAAGATTCAAATGCTCGTAAAAACAAATACTTAAATCAAACGTGGCTGGGATTTTGTTCGA
91907 TGAATATAGATATTTCAAGGAGTATTTACGTTAAAAATCATGCAAAAAC-AAAAAATAATATTTT
779 TGAATATAGATATTTCAAGGAGTATTTACGTTAAAAATCATGCAAAAACAAAAAAATAATATTTT
91971 CGGCTAAAAATACACAATTCAAAGCAAAAAAAAGTTGAAATA
844 CGGCTAAAAATACACAATTCAAAGCAAAAAAAAGTTGAAATA
*
92013 TTTTCTCGTTTTAAATATCATTTTTCTA-TTTTCTTCCGAATCTATTTCTTATTAAATCGAAACA
1 TTTTCTCGTTTTAAATATCATTTTTCTATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAACA
* *
92077 ATATTTAGATACTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAG
66 ATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAG
*
92142 ATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCAAAACTGAGCCGGGGCCACCG
131 ATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCC-CCG
92207 AAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCCAA
195 AAACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCCAA
92272 ATTTTTTTTTCTGAATTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGAT
260 ATTTTTTTTT-TGAATTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGAT
*
92337 TGATGGTCTTTTCACGAATTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTTATTAAA
324 TGATGGTCTTTTCACGATTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTTATTAAA
92402 TCGAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCT
389 TCGAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCT
92455 ATATTTCTCG
Statistics
Matches: 1261, Mismatches: 56, Indels: 20
0.94 0.04 0.01
Matches are distributed among these distances:
881 134 0.11
882 336 0.27
883 4 0.00
884 134 0.11
885 100 0.08
886 162 0.13
887 384 0.30
888 7 0.01
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (885 bp):
TTTTCTCGTTTTAAATATCATTTTTCTATTTTTTTTCCGAATCTATTTCTTATTAAATCGAAACA
ATATTCAGATGCTCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGCCTGAGATTGGTTAG
ATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGA
AACGCGTTTTTAGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCCAAA
TTTTTTTTTTGAATTTTTTGTCACAATACTCAGAAAAAATTTATAATTCAACACCAAAAAGATTG
ATGGTCTTTTCACGATTTTAATATCATTTTTCCAATTTTTTTCCGAATTAATTTCTTATTAAATC
GAAACAAGACTCAGATGCTTGTAAAAACAAATTCTTATATCCAATGTGGCTGACATTTGGTTTGA
TGAATATAGATATTTCAAGGAGTCTTTGCACCAAAAATCATGCAAAATTAAGTCGGGACTCGGGA
ACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAACTGATCGGAAAAG
CTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACCAAAAAGATTGAT
GGGCTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTGTCCGAATTAATTTTTAATTAAATTGA
AACAAGATTCAAATGCTCGTAAAAACAAATACTTAAATCAAACGTGGCTGGGATTTTGTTCGATG
AATATAGATATTTCAAGGAGTATTTACGTTAAAAATCATGCAAAAACAAAAAAATAATATTTTCG
GCTAAAAATACACAATTCAAAGCAAAAAAAAGTTGAAATA
Found at i:94146 original size:641 final size:640
Alignment explanation
Indices: 92797--97624 Score: 5418
Period size: 641 Copynumber: 7.5 Consensus size: 640
92787 AAAACCATGA
* * *
92797 TACACGATTTCGGCTAAAAACTGACC-TGAAATATTTTTTTCTGAATTTTTTGTCACAGTACT-A
1 TACACGATTTCGGCTAAAAACTGACCTTAAAAT-TTTTTTTCTGAATTTTTTGCCACAATACTCA
* * * * *
92860 -AAAAAA-ATATAATTCAACGGCAAAAATATTGACGGGCTTTTGACGCTTCTACTATCATTTTTC
65 GAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCATTTTTC
*
92923 CAATTTTTCCGAATTTTTTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCC
130 CAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCC
* * *
92988 TTAAATCCAATGTGGCTGAGATTTAGTTGGATTAATATAGATATTCCAAGGAGTCTTTCTGCCAA
195 TTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATT-CAAGGAGTCTTTCTGCCAA
* *
93053 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACTCGTTTTTAGCTCAAAAATC--G--G--G-AC
259 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGTAGTAC
** * *
93111 ACGATTTCGAATAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCACGATACCCAGAAA
324 ACGATTTCGGCTAAAAACTGACCTG-AAAATTTTTTTC--AATTTTTTGCCACAATACTCAGAAA
* * ** *
93176 AAATATATAATTCAACGCCAAAAAGATTGGCGGGCTTTTCACTCTTCTATTATCGTTTTTCCAAT
386 AAATATATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAAT
* * * *
93241 TTTCCCGAATTTATTTCTAACTAAAATCGAAACAAGATTTTGATACTCGTAAAAA-AAATCCCTA
451 TTTTCCGAATTTATTTCTAA-TTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATCCTTA
*
93305 AATCCAATGTGGCTTAGATTTGGTTAGATGAATATAGATATTCC-AGGAGTCTTTCTGCCAAAAA
515 AATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAAAA
* * * *
93369 TAATGTAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCC-AAAATCGTGATGGTTAA
580 TAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * ** *
93429 TACACGATTTCGGCT-AAAACTAACCTGAAGTTTTTTTTTTACTGTAATTTTTTTGCCACTAGTA
1 TACACGATTTCGGCTAAAAACTGACCTTAA-AATTTTTTTT-CTG-AA-TTTTTTGCCAC-AATA
* *
93493 CTCAGAAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTTTATTATCAT
61 CTCAG-AAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCAT
* * *
93558 TTTTCCAAATTTTTCCGGATTTTTTTCTAATTAAATCGAAACAAGATTTTGATAATCTTAAAAAT
125 TTTTCC-AATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAAT
* * * * *
93623 AAATCCTTAAATCCATTGTGACTGAAATTTGGTTGGATGAATATAGATAATTCAAGGAGTCTTTC
189 AAATCCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGAT-ATTCAAGGAGTCTTTC
*
93688 TGCCAAAAATAATGCAAAACTGAGTCGGGGCCCTGAAACGCG-TTTTAGCCCAAAAATCGTGATG
253 TGCCAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATG
* * *
93752 -CGTACACGATTTCGGCTAAAAACTGACCTGAAAAGTTTTTTTCAAATATTTGCCACAATACTCA
318 TAGTACACGATTTCGGCTAAAAACTGACCTGAAAA-TTTTTTTCAATTTTTTGCCACAATACTCA
* *** * * *
93816 GAAAAATTATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATATAG-TTTTC
382 GAAAAAATATATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTTC
*
93880 CAATTTTTTCCGAATTTATTT-TAATTAAATCGAAACAAGATTTAGATACACGTAAAAATAAATC
447 CAA-TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATC
* * * *
93944 CTTAAATCCAATGTGGCTGAGATTTAGTTAGATAAATATAGATATTCCAAGGAGACTTTCTACCA
511 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCA
* ** *
94009 AAAATCATGCAAAACTGA-TCGGGGCCCCGAAACGCGTTTTTTAGTTCAAAAATCGTGACGGTTA
576 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCG-TTTTTAGCCCAAAAATCGTGATGGTTA
94073 G
640 G
*
94074 TACACGATTTCGGTTAAAAACTGACCTTAAAATTTTTTTTCTGAATTTTTTTGCCACAATACTCA
1 TACACGATTTCGGCTAAAAACTGACCTTAAAATTTTTTTTCTGAA-TTTTTTGCCACAATACTCA
* * *
94139 GAAAAAATATATAATTCAACTCCAAAAAGATTGACAGGCTTTTCACTCTTCTATTATCGTTTTTC
65 GAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCATTTTTC
* * * * *
94204 CAATTTATCCCGAATTTATTTCTAATTAAATAGAAACAAGCTTTTAATAATCGTGAAAATAAATC
130 CAATTT-TTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATC
*
94269 CTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAGTATAGATATTTCAAGGAGTCTTTCTGCC-
194 CTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATA-TTCAAGGAGTCTTTCTGCCA
*
94333 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTAAGCCCAAAAATCGTGATGGTTAG
258 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGAT-G-TAG
* ** *
94398 TACACTATTTCGGCT-AAAACTGACCTGAATTTTTTTTTTCAATTTTTT-CCACAATACTCTGAA
321 TACACGATTTCGGCTAAAAACTGACCTGAA-AATTTTTTTCAATTTTTTGCCACAATACTCAGAA
* * * * * * *
94461 AAATTATATAATTAAAAGCCAAAAAAAATTAAGTGTTTTTCACGCTTCTATTATAGTTTTTCCAA
385 AAAATATATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAA
*
94526 TTTTATCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTT
450 TTTT-TCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATCCTT
* * * * *
94591 AAAACCAATCTGGCTGAGATTTCGTTGGATGAATATTA-ATATTCCAAGGAGTCTTTCTGCGAAA
514 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATA-TAGATATTCCAAGGAGTCTTTCTGCCAAA
* * * *
94655 AATAATGCAAAACTAACTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAGATCCTGATGGTTAG
578 AATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
94718 TACACGATTTCGAG-T-AAAACTGACCTGAAAATTTTTTTT-TCACTTTTTTGCCACAATACTCA
1 TACACGATTTCG-GCTAAAAACTGACCTTAAAATTTTTTTTCTGAATTTTTTGCCACAATACTCA
* * * * * * * * *
94780 GAAAAATTATATAATTCAATGTCAAAAAAATTTAAATGTTTTTCACGCTTCTAATAT-AGTTTTT
65 GAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCA-TTTTT
** * ** **
94844 TAAATTTTTCCCG-TTTTATTT-TAATTAAATCGAAACAAGATTCAGATACA-CGTAAATTTAAA
129 CCAATTTTT-CCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATA-ATCGTAAAAATAAA
* * *
94906 TCCTTAAATCCAATGTGGCTGAGATTTTGCTAGATGAATATAGATATGCCAAGGAGTCTTTCAGC
192 TCCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATAT-TCAAGGAGTCTTTCTGC
* * *
94971 CAAAAGTAATGCAAAACAGAGTCGGGGCCCCGAAACGCGTTTTTAGCTCAAAAATCGTGATGCTT
256 CAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATG--T
* * *
95036 AGTACACGATTTCGGCTAAAAACTTACCTGAAAAATTTTTTCTGAATTTTTTGCCACAATACCCA
319 AGTACACGATTTCGGCTAAAAACTGACCTG-AAAATTTTTT-TCAATTTTTTGCCACAATACTCA
* * *
95101 -AAAAAATATATAATTGAATGCC-AAAAAGTTTGACGGGCTTTTCACGCTTCTATTATCGTTTTT
382 GAAAAAATATATAATTCAAAGCCAAAAAAATTT-ACGGGCTTTTCACGCTTCTATTATCGTTTTT
* *
95164 CCAATTTTCCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATC
446 CCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATC
* *
95229 CTTAAATCCAATGTGGATGAGATTTGGTTAGATGAATATAGATATTCCCAGGAGTCTTTCTGCCA
511 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCA
* *
95294 AAAATAATGTAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
576 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* *
95359 TACGA-GATTTCGGCTAAAAATTGA-CTTGAAAATTTTTTTTTTCTGAAATTTTTGCCACAATAC
1 TAC-ACGATTTCGGCTAAAAACTGACCTT-AAAA--TTTTTTTTCTGAATTTTTTGCCACAATAC
* * *
95422 TCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTTTTATCGTTT
62 TCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCATTT
* * * * *
95487 TACCAATTTTTCTGAATTTATTTCTAATTAAATCGAAATAAGATTTTGATACTTGTAAAAATAAA
127 TTCCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAA
* *
95552 TGCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATTCTAAGGAGTCTTTCAGC
192 TCCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATTC-AAGGAGTCTTTCTGC
* * * *
95617 CAAAAGTAATGCAAAACAGAGTCGGGGCTCCGAAACGCGTTTTTAGCTCAAAAATCGTGATGGTT
256 CAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGAT-G-T
* * * * *
95682 AGTACACGACTTCAGCTAAAAACTGACCCGAAAATTTTTTTCCTGAATTTATTGCCACAATACCC
319 AGTACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTT-C--AATTTTTTGCCACAATACTC
* * * *
95747 AGAAAAAATATATAATTGAATGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTT
381 AGAAAAAATATATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTT
* *
95812 CCAATTTTCCCGAATTTATTTCTAATTAAATCGAAACACGATTTAGATTA-TCGTAAAAATAAAT
446 CCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGA-TACTCGTAAAAATAAAT
* * *
95876 CCTTAAATCCAATGTGGATGAGATTTGGTTAGATGAATATAAATATTCCCAGGAGTCTTTCTGCC
510 CCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCC
* * *
95941 AAAAAT-AT--AAAACTGAGTTGGGGCTCCGAAACGCGTTTTTAGCCCAAAAATCGTGACGGTTA
575 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTA
96003 G
640 G
* *
96004 TACGA-GATTTCGGCTAAAAACTG-TCTTGAAAATTTTTTTTCTAAATTTTTTTGCCACAATACT
1 TAC-ACGATTTCGGCTAAAAACTGACCTT-AAAATTTTTTTTCTGAA-TTTTTTGCCACAATACT
* * * *
96067 CAG-AAAAATAAACAATTCAACGCCTAAAAGATTGACAGGCTTTTCACGCTTCTATTATCGTTTT
63 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCATTTT
*
96131 TCCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTAATAATCGTAAAAATAAAT
128 TCCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAAT
*
96196 CATTAAATCCAA--T-G-T--G-----GTT-GA-G--TATAGATATTCCAAGGAGTCTTTCTGCC
193 CCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATT-CAAGGAGTCTTTCTGCC
*
96246 AAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTA
257 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGAT-G-TA
* * * *
96311 GTACACTATTTCGGCCAAAAACTGACCTGAAATTTTTTTTTTTCAATTTTTTCCCACAATACTCA
320 GTACACGATTTCGGCTAAAAACTGACCTGAAA---ATTTTTTTCAATTTTTTGCCACAATACTCA
** * * * * * * *
96376 GAAAATTTATATAATTAAAAGCCCAAAAAA-TTAAGTGTTTTTCACGCTTCTAATATAGTTTTTC
382 GAAAAAATATATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTTC
* * *
96440 CAATTTTATCCGAATTTATTTCTAATTAAATGGATACAAGATTCAGATACTCGTAAAAATAAATC
447 CAATTTT-TCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATC
* * ** * **
96505 CTTAAAACTAATGTGGCTGAGATTTCATTAGATGAATATTA-ATATTCAAAGGAGTCTTTCAACC
511 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA-TAGATATTCCAAGGAGTCTTTCTGCC
* * * *
96569 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGGTTTTAGCCCAAAGATCCTGA---TAA
575 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTA
96631 CG
640 -G
* * * ** * * *
96633 TACATGATTTCAGATAAAAACTGACCAGAAAAGTTTTTTTTTTCAATTTTTTGCCACAATAATCA
1 TACACGATTTCGGCTAAAAACTGACCTTAAAA-TTTTTTTTCTGAATTTTTTGCCACAATACTCA
* * * * * * * *
96698 GAAAAATTATATAATTTC-ATGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATAT-AGTTTT
65 GAAAAAATATATAA-TTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCA-TTTT
* * ** **
96761 TCCAATTTTTTCAAATTTATTT-TAATTAAATCGAAACAAGATTCAGATACA-CGTAAAGTTAAA
128 TCCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATA-ATCGTAAAAATAAA
** *
96824 TCCTTAAATCCAATGTGGCTGAGATTTAATTAGATGAATATAGATATTCCAAGGAGGCTTTCTGC
192 TCCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATT-CAAGGAGTCTTTCTGC
** ** * * *
96889 CAAAAATAATATAAAACTGAGTCCAGACCCCGAAACACGTTTTTAGCCTAAAAATCGTGATGATT
256 CAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATG--T
* *
96954 AGTACACGATTTCAGCTAAAATCTGACCTGAAAATTTTTTTCTTAATTTTTTGCCACAATACTCA
319 AGTACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTTC--AATTTTTTGCCACAATACTCA
* * * * *
97019 GATAAAATATATAATTCAACA-CCAAAAATATTGACGGGCTTTACACTCTTCTATTATCGTTTTT
382 GAAAAAATATATAATTCAA-AGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTT
* *
97083 CCAA-TTTTCCAGAATTTATTTCTAATTAAATCGAAACAAGATTCTA-AT-CTTCGTAAATACAA
446 CCAATTTTTCC-GAATTTATTTCTAATTAAATCGAAACAAGATT-TAGATAC-TCGTAAAAATAA
* * * * * * * * ** **
97145 ATCCTTAATTCCAATGTGGTTGAAAATTT-GTTTGTTGAATACATATATTTCAACAAGTCCTGGC
508 ATCCTTAAATCCAATGTGGCTG-AGATTTGGTTAGATGAATATAGATATTCCAAGGAGT-CTTTC
* * ** * *
97209 -GCCAAAAATTATGCAAAATTGAGTCGGGTTCTC-AGAACGCATTTTTAG-CCAAAAA-CTGTGA
571 TGCCAAAAATAATGCAAAACTGAGTCGGGGCCCCGA-AACGCGTTTTTAGCCCAAAAATC-GTGA
* *
97270 T--TGAT
634 TGGTTAG
* ** * ** **
97275 TACACGATTT-GGACT-AAAATTTTCC-AAAAATTAAATCGAAAGGTTTTTCCTCTATTTTCGGC
1 TACACGATTTCGG-CTAAAAACTGACCTTAAAATT---T-------TTTTT-CTGAATTTTTTGC
* * * * * * * *
97337 CACAAAATTTA-AAAATATATATAATTTAACACCAAAAAGATT-AAAGGGCTTTTCATGCTTCTA
54 CACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACA-GGCTTTTCACGCTTCTA
* * * ** * * * *
97400 ATATCATTTATCATAAGTTTTTTTGAAGTAATTTTTAATTAAATCGAAACAAGATTTTGATACTC
118 TTATCATTTTTC-CAA-TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATC
* * * * * * *
97465 GTAAAAACAAATCTTTAAATCCAATGTGGCTAAGA-TTTGCTCAGATGAACACAGATATTTCAAC
181 GTAAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTTG-TTAGATGAATATAGATA-TTCAAG
* * ** * ** * *
97529 GAGTCTTGC-GCCAAAAATCATGTGAAACTAAGTCGGGATCCCGTAACGTGTTTTTAG-CCAAAA
244 GAGTCTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAA
* *
97592 A-CTGTGATGTTTAGTAAATGATTTCGGCTAAAA
309 ATC-GTGATG--TAGTACACGATTTCGGCTAAAA
97625 TTTTGCCAAA
Statistics
Matches: 3616, Mismatches: 440, Indels: 262
0.84 0.10 0.06
Matches are distributed among these distances:
627 37 0.01
628 264 0.07
629 94 0.03
630 79 0.02
631 65 0.02
632 27 0.01
633 5 0.00
634 2 0.00
635 11 0.00
636 6 0.00
637 2 0.00
638 1 0.00
639 101 0.03
640 202 0.06
641 641 0.18
642 220 0.06
643 475 0.13
644 463 0.13
645 239 0.07
646 226 0.06
647 23 0.01
648 187 0.05
649 59 0.02
650 52 0.01
651 53 0.01
652 80 0.02
653 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (640 bp):
TACACGATTTCGGCTAAAAACTGACCTTAAAATTTTTTTTCTGAATTTTTTGCCACAATACTCAG
AAAAAATATATAATTCAACGCCAAAAAGATTGACAGGCTTTTCACGCTTCTATTATCATTTTTCC
AATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCT
TAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATTCAAGGAGTCTTTCTGCCAAAA
ATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGTAGTACAC
GATTTCGGCTAAAAACTGACCTGAAAATTTTTTTCAATTTTTTGCCACAATACTCAGAAAAAATA
TATAATTCAAAGCCAAAAAAATTTACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTC
CGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAATAAATCCTTAAATCCA
ATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAAAATAATGC
AAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
Found at i:95284 original size:321 final size:322
Alignment explanation
Indices: 92797--97624 Score: 5525
Period size: 320 Copynumber: 15.1 Consensus size: 322
92787 AAAACCATGA
* *
92797 TACACGATTTCGGCTAAAAACTGACCTGAAATATTTTTTTCTGAATTTTTTGTCACAGTACT-A-
1 TACACGATTTCGGCTAAAAACTGACCTGAAA-ATTTTTTTCTGAATTTTTTGCCACAATACTCAG
* * * * *
92860 AAAAAA-ATATAATTCAACGGCAAAAATATTGACGGGCTTTTGACGCTTCTACTATCATTTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
* *
92924 AATTTTTCCGAATTTTTTTCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCT
130 AATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCCT
* * *
92989 TAAATCCAATGTGGCTGAGATTTAGTTGGATTAATATAGATATTCCAAGGAGTCTTTCTGCCAAA
195 TAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAA
* *
93054 AATAATGCAAAACTGAGTCGGGGCCCCGAAACTCGTTTTTAGCTCAAAAATC-----GG---G
260 AATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
** * *
93109 -ACACGATTTCGAATAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCACGATACCCAG
1 TACACGATTTCGGCTAAAAACTGACCTG-AAAATTTTTTTCTGAATTTTTTGCCACAATACTCAG
* *
93173 AAAAAATATATAATTCAACGCCAAAAAGATTGGCGGGCTTTTCACTCTTCTATTATCGTTTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
* *
93238 AATTTTCCCGAATTTATTTCTAACTAAAATCGAAACAAGATTTTGATACTCGTAAAAA-AAATCC
130 AATTTTTCCGAATTTATTTCTAA-TTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCC
* *
93302 CTAAATCCAATGTGGCTTAGATTTGGTTAGATGAATATAGATATTCC-AGGAGTCTTTCTGCCAA
194 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAA
* * * *
93366 AAATAATGTAAAATTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCC-AAAATCGTGATGGTTAA
259 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* ** *
93429 TACACGATTTCGGCT-AAAACTAACCTGAAGTTTTTTTTTTACTGTAATTTTTTTGCCACTAGTA
1 TACACGATTTCGGCTAAAAACTGACCTGAA--AATTTTTTT-CTG-AA-TTTTTTGCCAC-AATA
* *
93493 CTCAGAAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTTTATTATCAT
60 CTCAG-AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGT
* * * *
93558 TTTTCCAAATTTTTCCGGATTTTTTTCTAATTAAATCGAAACAAGATTTTGATAATCTTAAAAAT
124 TTTTCC-AATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAAT
* * * *
93623 AAATCCTTAAATCCATTGTGACTGAAATTTGGTTGGATGAATATAGATAATT-CAAGGAGTCTTT
188 AAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGAT-ATTCCAAGGAGTCTTT
*
93687 CTGCCAAAAATAATGCAAAACTGAGTCGGGGCCCTGAAACGCG-TTTTAGCCCAAAAATCGTGAT
252 CTGCCAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGAT
*
93751 -G--CG
317 GGTTAG
* *
93754 TACACGATTTCGGCTAAAAACTGACCTGAAAAGTTTTTTTC--AAATATTTGCCACAATACTCAG
1 TACACGATTTCGGCTAAAAACTGACCTGAAAA-TTTTTTTCTGAATTTTTTGCCACAATACTCAG
* * * * *** * * *
93817 AAAAATTATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATATAG-TTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
* *
93881 AATTTTTTCCGAATTTATTT-TAATTAAATCGAAACAAGATTTAGATACACGTAAAAATAAATCC
130 AA-TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCC
* * * *
93945 TTAAATCCAATGTGGCTGAGATTTAGTTAGATAAATATAGATATTCCAAGGAGACTTTCTACCAA
194 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAA
* ** *
94010 AAATCATGCAAAACTGA-TCGGGGCCCCGAAACGCGTTTTTTAGTTCAAAAATCGTGACGGTTAG
259 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCG-TTTTTAGCCCAAAAATCGTGATGGTTAG
* *
94074 TACACGATTTCGGTTAAAAACTGACCTTAAAATTTTTTTTCTGAATTTTTTTGCCACAATACTCA
1 TACACGATTTCGGCTAAAAACTGACCTGAAAA-TTTTTTTCTGAA-TTTTTTGCCACAATACTCA
* * *
94139 GAAAAAATATATAATTCAACTCCAAAAAGATTGACAGGCTTTTCACTCTTCTATTATCGTTTTTC
64 GAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTC
* * * * * *
94204 CAATTTATCCCGAATTTATTTCTAATTAAATAGAAACAAGCTTTTAATAATCGTGAAAATAAATC
129 CAATTT-TTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATC
* * *
94269 CTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAGTATAGATATTTCAAGGAGTCTTTCTGCC-
193 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCA
*
94333 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTAAGCCCAAAAATCGTGATGGTTAG
258 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * * * *
94398 TACACTATTTCGGCT-AAAACTGACCTG-AATTTTTTTTTTCAATTTTTT-CCACAATACTCTGA
1 TACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTTCTGAATTTTTTGCCACAATACTCAGA
* * * * * * * *
94460 AAAATTATATAATTAAAAGCCAAAAAAAATT-AAGTGTTTTTCACGCTTCTATTATAGTTTTTCC
66 AAAAATATATAATTCAACGCC-AAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
**
94524 AATTTTATCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCC
130 AATTTT-TCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCC
* * * * *
94589 TTAAAACCAATCTGGCTGAGATTTCGTTGGATGAATATTA-ATATTCCAAGGAGTCTTTCTGCGA
194 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA-TAGATATTCCAAGGAGTCTTTCTGCCA
* * * *
94653 AAAATAATGCAAAACTAACTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAGATCCTGATGGTTAG
258 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
94718 TACACGATTTCGAG-T-AAAACTGACCTGAAAATTTTTTTTTCACTTTTTTGCCACAATACTCAG
1 TACACGATTTCG-GCTAAAAACTGACCTGAAAATTTTTTTCTGAATTTTTTGCCACAATACTCAG
* * * * * *** * * * **
94781 AAAAATTATATAATTCAATGTCAAAAAAATTTAAATGTTTTTCACGCTTCTAATATAGTTTTTTA
65 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
* ** * **
94846 AATTTTTCCCG-TTTTATTT-TAATTAAATCGAAACAAGATTCAGATACACGTAAATTTAAATCC
130 AATTTTT-CCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCC
* * * *
94909 TTAAATCCAATGTGGCTGAGATTTTGCTAGATGAATATAGATATGCCAAGGAGTCTTTCAGCCAA
194 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAA
* * * *
94974 AAGTAATGCAAAACAGAGTCGGGGCCCCGAAACGCGTTTTTAGCTCAAAAATCGTGATGCTTAG
259 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
95038 TACACGATTTCGGCTAAAAACTTACCTGAAAAATTTTTTCTGAATTTTTTGCCACAATACCCA-A
1 TACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTTCTGAATTTTTTGCCACAATACTCAGA
* * *
95102 AAAAATATATAATTGAATGCCAAAAAGTTTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCA
*
95167 ATTTTCCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCCTT
131 ATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCCTT
* *
95232 AAATCCAATGTGGATGAGATTTGGTTAGATGAATATAGATATTCCCAGGAGTCTTTCTGCCAAAA
196 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAAA
* *
95297 ATAATGTAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
261 ATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
95359 TACGA-GATTTCGGCTAAAAATTGACTTGAAAATTTTTTTTTTCTGAAATTTTTGCCACAATACT
1 TAC-ACGATTTCGGCTAAAAACTGACCTGAAAA---TTTTTTTCTGAATTTTTTGCCACAATACT
*
95423 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTTTTATCGTTTT
62 CAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTT
* * * *
95488 ACCAATTTTTCTGAATTTATTTCTAATTAAATCGAAATAAGATTTTGATACTTGTAAAAATAAAT
127 TCCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAAT
* * * *
95553 GCTTAAATCCAATGTGGCTGAGATTTTGTTAGATGAATATAGATATTCTAAGGAGTCTTTCAGCC
192 CCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCC
* * * *
95618 AAAAGTAATGCAAAACAGAGTCGGGGCTCCGAAACGCGTTTTTAGCTCAAAAATCGTGATGGTTA
257 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTA
95683 G
322 G
* * * * *
95684 TACACGACTTCAGCTAAAAACTGACCCGAAAATTTTTTTCCTGAATTTATTGCCACAATACCCAG
1 TACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTT-CTGAATTTTTTGCCACAATACTCAG
* *
95749 AAAAAATATATAATTGAATGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
65 AAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCC
* * *
95814 AATTTTCCCGAATTTATTTCTAATTAAATCGAAACACGATTTAGATTA-TCGTAAAAATAAATCC
130 AATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGA-TACTCGTAAAAATAAATCC
* * *
95878 TTAAATCCAATGTGGATGAGATTTGGTTAGATGAATATAAATATTCCCAGGAGTCTTTCTGCCAA
194 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAA
* * *
95943 AAAT-AT--AAAACTGAGTTGGGGCTCCGAAACGCGTTTTTAGCCCAAAAATCGTGACGGTTAG
259 AAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
96004 TACGA-GATTTCGGCTAAAAACTGTCTTGAAAATTTTTTTTCTAAATTTTTTTGCCACAATACTC
1 TAC-ACGATTTCGGCTAAAAACTGACCTGAAAA-TTTTTTTCTGAA-TTTTTTGCCACAATACTC
* * * *
96068 AG-AAAAATAAACAATTCAACGCCTAAAAGATTGACAGGCTTTTCACGCTTCTATTATCGTTTTT
63 AGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTT
* *
96132 CCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTAATAATCGTAAAAATAAATC
128 CCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATC
*
96197 ATTAAATCCAA------T--G---TGGTT-GA-G--TATAGATATTCCAAGGAGTCTTTCTGCCA
193 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCA
*
96247 AAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
258 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * * * * *
96312 TACACTATTTCGGCCAAAAACTGACCTGAAATTTTTTTTTTTCAATTTTTTCCCACAATACTCAG
1 TACACGATTTCGGCTAAAAACTGACCTGAAA-ATTTTTTTCTGAATTTTTTGCCACAATACTCAG
** * * * * * * *
96377 AAAATTTATATAATTAAAAGCCCAAAAA-ATT-AAGTGTTTTTCACGCTTCTAATATAGTTTTTC
65 AAAAAATATATAATTCAACG-CCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTC
* * **
96440 CAATTTTATCCGAATTTATTTCTAATTAAATGGATACAAGATTCAGATACTCGTAAAAATAAATC
129 CAATTTT-TCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATC
* * ** * **
96505 CTTAAAACTAATGTGGCTGAGATTTCATTAGATGAATATTA-ATATTCAAAGGAGTCTTTCAACC
193 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA-TAGATATTCCAAGGAGTCTTTCTGCC
* * * *
96569 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGGTTTTAGCCCAAAGATCCTGA---TAA
257 AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTA
96631 CG
322 -G
* * * * * * *
96633 TACATGATTTCAGATAAAAACTGACCAGAAAAGTTTTTTTTTTCAATTTTTTGCCACAATAATCA
1 TACACGATTTCGGCTAAAAACTGACCTGAAAA--TTTTTTTCTGAATTTTTTGCCACAATACTCA
* * * * *** * * *
96698 GAAAAATTATATAATTTC-ATGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATATAGTTTTT
64 GAAAAAATATATAA-TTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTT
* * ** * **
96762 CCAATTTTTTCAAATTTATTT-TAATTAAATCGAAACAAGATTCAGATACACGTAAAGTTAAATC
128 CCAATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATC
** *
96826 CTTAAATCCAATGTGGCTGAGATTTAATTAGATGAATATAGATATTCCAAGGAGGCTTTCTGCCA
193 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCA
** ** * * * *
96891 AAAATAATATAAAACTGAGTCCAGACCCCGAAACACGTTTTTAGCCTAAAAATCGTGATGATTAG
258 AAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
* * *
96956 TACACGATTTCAGCTAAAATCTGACCTGAAAATTTTTTTCTTAATTTTTTGCCACAATACTCAGA
1 TACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTTCTGAATTTTTTGCCACAATACTCAGA
* * * * *
97021 TAAAATATATAATTCAACACCAAAAATATTGACGGGCTTTACACTCTTCTATTATCGTTTTTCCA
66 AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCA
* * * *
97086 A-TTTTCCAGAATTTATTTCTAATTAAATCGAAACAAGATTCTAAT-CTTCGTAAATACAAATCC
131 ATTTTTCC-GAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAC-TCGTAAAAATAAATCC
* * * * * * * * ** **
97149 TTAATTCCAATGTGGTTGAAAATTT-GTTTGTTGAATACATATATTTCAACAAGTCCTGGC-GCC
194 TTAAATCCAATGTGGCTG-AGATTTGGTTAGATGAATATAGATATTCCAAGGAGT-CTTTCTGCC
* * ** * *
97212 AAAAATTATGCAAAATTGAGTCGGGTTCTC-AGAACGCATTTTTAG-CCAAAAA-CTGTGAT--T
257 AAAAATAATGCAAAACTGAGTCGGGGCCCCGA-AACGCGTTTTTAGCCCAAAAATC-GTGATGGT
* *
97272 GAT
320 TAG
* * ** ** * ** **
97275 TACACGATTT-GGACTAAAATTTTCCAAAAATTAAATCGAAAGGTTTTTCCTCTATTTTCGGCCA
1 TACACGATTTCGG-CT---A------AAAACTGACCT-GAAAATTTTTTTCTGAATTTTTTGCCA
* * * * * * * * * *
97339 CAAAATTTA-AAAATATATATAATTTAACACCAAAAAGATTAAAGGGCTTTTCATGCTTCTAATA
55 CAATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTA
* * * ** * * *
97403 TCATTTATCATAAGTTTTTTTGAAGTAATTTTTAATTAAATCGAAACAAGATTTTGATACTCGTA
120 TCGTTTTTC-CAA-TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTA
* * * * * * * * *
97468 AAAACAAATCTTTAAATCCAATGTGGCTAAGATTTGCTCAGATGAACACAGATATTTCAACGAGT
183 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * ** * ** * *
97533 CTTGC-GCCAAAAATCATGTGAAACTAAGTCGGGATCCCGTAACGTGTTTTTAG-CCAAAAA-CT
248 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATC-
*
97595 GTGATGTTTAG
312 GTGATGGTTAG
* *
97606 TAAATGATTTCGGCTAAAA
1 TACACGATTTCGGCTAAAA
97625 TTTTGCCAAA
Statistics
Matches: 3866, Mismatches: 520, Indels: 250
0.83 0.11 0.05
Matches are distributed among these distances:
305 32 0.01
306 2 0.00
307 54 0.01
308 163 0.04
309 11 0.00
311 51 0.01
312 11 0.00
313 64 0.02
314 122 0.03
315 52 0.01
316 112 0.03
317 41 0.01
318 49 0.01
319 200 0.05
320 606 0.16
321 593 0.15
322 255 0.07
323 434 0.11
324 122 0.03
325 402 0.10
326 105 0.03
327 73 0.02
328 122 0.03
329 88 0.02
330 83 0.02
331 17 0.00
332 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (322 bp):
TACACGATTTCGGCTAAAAACTGACCTGAAAATTTTTTTCTGAATTTTTTGCCACAATACTCAGA
AAAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCA
ATTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAAAAATAAATCCTT
AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCCAAAA
ATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCGTGATGGTTAG
Found at i:97973 original size:224 final size:222
Alignment explanation
Indices: 97573--98197 Score: 880
Period size: 224 Copynumber: 2.8 Consensus size: 222
97563 GGGATCCCGT
*
97573 AACGTGTTTTTAGCCAAAAACTGTGATGTTTAGTA-AATGATTTCGGCTAAAATTTTGCCAAAAT
1 AACGCGTTTTTAGCCAAAAACTGTGATG-TTAGTACAA-GATTTCGGCTAAAATTTTG-CAAAAT
*
97637 TGAATCGAAAA-TTTTCCCTCAATTTTTGGCATAATTCTCATAAAAAATACATAAATTCAATGCC
63 TGAATCGAAAATTTTTCCCTCAATTTTTGGCATAATTCTC-TAAAAAATATATAAATTCAATGCC
* *
97701 AATAAGATTGAAAGGATTTTTACACTTCTAATATCATTTC-GACTATTTCAACAAGTACTCGCGC
127 AATAAGATTGAAAGG-CTTTCACACTTCTAATATCATTTCTG-CTATTTCAACAAGTACTCGCGC
* *
97765 CAAAAATCATGCAAAATTGAATCGGGTTGCCGG
190 CAAAAATAATGCAAAATTGAATCGAGTTGCCGG
** * * *
97798 ATTGCGTTTTTAGCCAAAAACTATAATAGTTAGTACACGATTTCGGCTAAAATTTTGCAAAGATT
1 AACGCGTTTTTAGCCAAAAACTGTGAT-GTTAGTACAAGATTTCGGCTAAAATTTTGCAAA-ATT
* * * *
97863 AAATAGAAAATTTTTCCCTCAATTTTTGGCATAATGCTCT-AAAAATATATAAATTCAATGTCAA
64 GAATCGAAAATTTTTCCCTCAATTTTTGGCATAATTCTCTAAAAAATATATAAATTCAATGCCAA
*
97927 TAAGATTGAAAGGCTTTACACACTTCTAATACCATTTCTGCTATTTCAACAAGTACTCGCGCCAA
129 TAAGATTGAAAGGCTTT-CACACTTCTAATATCATTTCTGCTATTTCAACAAGTACTCGCGCCAA
* *
97992 AAATAATGCAAACTTGAGTCGAGTTGCCGG
193 AAATAATGCAAAATTGAATCGAGTTGCCGG
* *
98022 AACGTGATTTTAGCCAAAAACTGTGATGGTTAGTACAAGATTTCGGCTAAAATTTTGCAAAATTG
1 AACGCGTTTTTAGCCAAAAACTGTGAT-GTTAGTACAAGATTTCGGCTAAAATTTTGCAAAATTG
* * *
98087 AATCGAAAATTTTTCCCTCGATTTTTGCCATAATTCTCTAAAAAAGTATATAACTTCAATGCCAA
65 AATCGAAAATTTTTCCCTCAATTTTTGGCATAATTCTCTAAAAAA-TATATAAATTCAATGCCAA
* * *
98152 TAAGATTGAAAGGCATTTCACATTTCTAATATCATTTTTTCTATTT
129 TAAGATTGAAAGGC-TTTCACACTTCTAATATCATTTCTGCTATTT
98198 TTTTCCGAAT
Statistics
Matches: 354, Mismatches: 37, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
223 41 0.12
224 166 0.47
225 115 0.32
226 32 0.09
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.34
Consensus pattern (222 bp):
AACGCGTTTTTAGCCAAAAACTGTGATGTTAGTACAAGATTTCGGCTAAAATTTTGCAAAATTGA
ATCGAAAATTTTTCCCTCAATTTTTGGCATAATTCTCTAAAAAATATATAAATTCAATGCCAATA
AGATTGAAAGGCTTTCACACTTCTAATATCATTTCTGCTATTTCAACAAGTACTCGCGCCAAAAA
TAATGCAAAATTGAATCGAGTTGCCGG
Found at i:98277 original size:15 final size:15
Alignment explanation
Indices: 98257--98346 Score: 60
Period size: 15 Copynumber: 5.9 Consensus size: 15
98247 AAAAACAAAT
98257 CCTACTGAATATGGC
1 CCTACTGAATATGGC
98272 CCTACTGAATAT-GC
1 CCTACTGAATATGGC
** *
98286 AAATA-TAATATTATGGC
1 -CCTACTGA-A-TATGGC
98303 CCTACTGAATAT-GC
1 CCTACTGAATATGGC
* * *
98317 AACTATATGATTATGGC
1 -CCTA-CTGAATATGGC
98334 CCTACTGAATATG
1 CCTACTGAATATG
98347 CAACTACATG
Statistics
Matches: 55, Mismatches: 12, Indels: 16
0.66 0.14 0.19
Matches are distributed among these distances:
14 6 0.11
15 28 0.51
16 15 0.27
17 6 0.11
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (15 bp):
CCTACTGAATATGGC
Found at i:98381 original size:24 final size:25
Alignment explanation
Indices: 98297--101318 Score: 2799
Period size: 27 Copynumber: 112.0 Consensus size: 25
98287 AATATAATAT
*
98297 TATGGCCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
98322 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
* * *
98353 CATGACCCTCCTGAATATG-TACTA
1 TATGACCCTACTGAATATGCAACTA
*
98377 TATGATTCCCAACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
98404 TATGGCCCCTACTAAATATGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
* *
98430 TATGATTCCTATTGAATATGCAACAATATGA
1 TATGA-CCCTACTGAATATGCAAC----T-A
*
98461 TTATGGCCCTACTGAATATGCAACTA
1 -TATGACCCTACTGAATATGCAACTA
*
98487 CATGACCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
* * *
98512 TATGATTCGCTACTGAATTTGCAACTG
1 TATGA--CCCTACTGAATATGCAACTA
*
98539 TATGATTCCCTACAGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
98566 TATGGTCCCTATTGAATATGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
*
98592 TTTGGACCCTACTGAATATGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
*
98618 TATGATTCCCTACCGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
98645 TATGACCCCTACTGAATATGCAATTA
1 TATGA-CCCTACTGAATATGCAACTA
* *
98671 TATGACCCCTACTAAATATACAACAATATGA
1 TATGA-CCCTACTGAATATGCAAC----T-A
*
98702 TTATGGCCCTACTGAATATGCAACTA
1 -TATGACCCTACTGAATATGCAACTA
*
98728 CATGACCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
98753 TATGATTCCATACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
98780 TACGGCCCATACTGAATATGCAACTA
1 TATGACCC-TACTGAATATGCAACTA
* * *
98806 TATGATTCCAACCTGAATATACAACTA
1 TATGA-CCCTA-CTGAATATGCAACTA
* *
98833 TATGATTCCCTGCTGATTATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
98860 TATGACCCATAGTGAATATGCAACTA
1 TATGACCC-TACTGAATATGCAACTA
98886 TATGACCCATACTGAATATGCAACTA
1 TATGACCC-TACTGAATATGCAACTA
98912 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
98939 TATGATTATGGCCCTACTGATTATGCAATTA
1 TATG---A---CCCTACTGAATATGCAACTA
* *
98970 TATGATTATAGCTCTACTGAATATGCAATTA
1 TATG-----A-CCCTACTGAATATGCAACTA
* *
99001 CATGACCCTTCTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
* *
99026 TATGATTGCCTACTAAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99053 TATGATTCGCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99080 TATGGCCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
99105 TATGATTCCCTACAGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99132 TATGATTCCCTACTGAATATGCAATTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99159 TATGATTATGGCCCTACAGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
*
99190 TATGATTCCCTACTGATTATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
99217 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
99244 TATGACCCCTATTGAATATACAACTA
1 TATGA-CCCTACTGAATATGCAACTA
*
99270 TATGATTCCCTACAGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99297 TATGGCCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
99322 TATGATTATGGCCCTACTGAATATGCAACTG
1 TATG---A---CCCTACTGAATATGCAACTA
*
99353 CATGACCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
99378 TATGATTCCCTAATGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99405 TATGATTCACTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
99432 TATGGCCCCTACTGAATATACAACTA
1 TAT-GACCCTACTGAATATGCAACTA
*
99458 TATGGCCCCTACTGAATATGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
99484 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99511 TATGATTATGGCCCTGCTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
* *
99542 TATGGCCCCTACTGAATGTGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
*
99568 -ATGATTCCCTACTGAATATACAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
99594 TATGGCCCCTACTGAATATGCAAATA
1 TAT-GACCCTACTGAATATGCAACTA
99620 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99647 TATTGCCCCTACTGAATATGCAACTA
1 TA-TGACCCTACTGAATATGCAACTA
*
99673 TATGATTCCTTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
99700 TATGATTCCCTATTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
99727 TATGACCCCTACTGAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
* *
99753 TATGATTCCCTAATAAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
99780 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
99811 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
* *
99842 CATGACCTTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
99867 TATGATTCCTTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* * * *
99894 TATGAATCCATACTTACTATACAACTA
1 TATG-A-CCCTACTGAATATGCAACTA
99921 TATGATGGCCCTACTGAATATGCAACTA
1 TATGA---CCCTACTGAATATGCAACTA
99949 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
99976 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100003 TATGATTCCTTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100030 TATGATTCCCTATTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100057 TATGACCCCTACAGAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
*
100083 CATGACCCCTACTGAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
100109 TATGATTAAGGCCCTACTGAATATGCAACTA
1 TATG----A--CCCTACTGAATATGCAACTA
100140 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
100171 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
* *
100202 CATGACCTTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
100227 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100254 TATTATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* *
100281 TATGGCCCCTACTGAATATGCAATTA
1 TAT-GACCCTACTGAATATGCAACTA
100307 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
100334 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100361 TATGACCCCTACTAAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
100387 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
100414 TATGAATCCCTACTGAATATGCAACTA
1 TATG-A-CCCTACTGAATATGCAACTA
*
100441 TATGACCCATACTGAATATGCAACTC
1 TATGACCC-TACTGAATATGCAACTA
100467 TATGATTCCCTACTGAATATGCAACTACATGA
1 TATGA--CCCTACTGAATATGC-A--AC-T-A
* *
100499 TTATGGCCCTACTAAATATGCAACTA
1 -TATGACCCTACTGAATATGCAACTA
100525 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
*
100556 TATGGCCCCTACTGAATATGCAACTA
1 TAT-GACCCTACTGAATATGCAACTA
100582 TATGATTCCCTACTGAATATG-----A
1 TATGA--CCCTACTGAATATGCAACTA
100604 -AT--CCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
100626 TATGACCCCTACTGAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
100652 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
100679 TATGACCCCTACTGAATATGCAACTA
1 TATGA-CCCTACTGAATATGCAACTA
100705 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
100732 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
100763 TATGATTATGGCCCTACTGAATATGCAACTA
1 TATG---A---CCCTACTGAATATGCAACTA
100794 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
100821 TATGACCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
100846 TATGACACCCTAATGAATATGCAACTA
1 TATG--ACCCTACTGAATATGCAACTA
* * *
100873 TATGATTACCTACTAAATATGCAATTA
1 TATGA--CCCTACTGAATATGCAACTA
*
100900 TATGATTCCCTACTGAATAT-CTAACTT
1 TATGA--CCCTACTGAATATGC-AACTA
** *
100927 TATGGTCCTACTGAACATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
*
100952 TATGATTCCTTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
* * *
100979 TATGGCCCTACTGAATTTGCAACCA
1 TATGACCCTACTGAATATGCAACTA
*
101004 TATGATTTCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
101031 TATGACCCTACTGAATATGCAACCA
1 TATGACCCTACTGAATATGCAACTA
* * * *
101056 TATGGCCCTTCTGAATTTGAAACTA
1 TATGACCCTACTGAATATGCAACTA
** *
101081 TATGGTCCTACTGAATATGAAACTA
1 TATGACCCTACTGAATATGCAACTA
*
101106 TATGATCCTACTGAATATGCAACTA
1 TATGACCCTACTGAATATGCAACTA
101131 TATGATTCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
101158 TATGATGCCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
101185 TATGATTTCCTACTGAATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
*
101212 TATGGCCACTACTGAATATGCAACTA
1 TATGACC-CTACTGAATATGCAACTA
101238 TATGATACCCTACTGAATATGCAACTA
1 TATG--ACCCTACTGAATATGCAACTA
* * *
101265 TATGATGCCCTAGTGAATATGGAACCA
1 TATGA--CCCTACTGAATATGCAACTA
* *
101292 TATGATTCCCCACTGTATATGCAACTA
1 TATGA--CCCTACTGAATATGCAACTA
101319 CATGGTCCTA
Statistics
Matches: 2589, Mismatches: 258, Indels: 298
0.82 0.08 0.09
Matches are distributed among these distances:
17 14 0.01
21 2 0.00
22 2 0.00
23 2 0.00
24 9 0.00
25 385 0.15
26 582 0.22
27 1124 0.43
28 49 0.02
30 13 0.01
31 391 0.15
32 10 0.00
33 6 0.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (25 bp):
TATGACCCTACTGAATATGCAACTA
Found at i:98604 original size:79 final size:79
Alignment explanation
Indices: 98271--101326 Score: 3254
Period size: 79 Copynumber: 37.7 Consensus size: 79
98261 CTGAATATGG
* *
98271 CCCTACTGAATATGCAAATATAAT-ATTATGGCCCTACTGAATATGCAACTATATGATTATGGCC
1 CCCTACTGAATATGCAACTAT-ATGA-T-T--CCCTACTGAATATGCAACTATATG-----GTCC
*
98335 CTACTGAATATGCAACTACATGA-
56 CTACTGAATATGCAACTATATGAT
* * * * *
98358 CCCTCCTGAATATG-TACTATATGATTCCCAACTGAATATGCAACTATATGGCCCCTACTAAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
98422 TGCAACTATATGAT
66 TGCAACTATATGAT
* * * * *
98436 TCCTATTGAATATGCAACAATATGATTATGGCCCTACTGAATATGCAACTACAT-GACCCTACTG
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGGTCCCTACTG
98500 AATATGCAACTATATGATT
62 AATATGCAACTATATGA-T
* * * * *
98519 CGCTACTGAATTTGCAACTGTATGATTCCCTACAGAATATGCAACTATATGGTCCCTATTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
*
98584 TGCAACTATTTGGA-
66 TGCAACTATAT-GAT
* **
98598 CCCTACTGAATATGCAACTATATGATTCCCTACCGAATATGCAACTATATGACCCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
* *
98663 TGCAATTATATGAC
66 TGCAACTATATGAT
* * * * *
98677 CCCTACTAAATATACAACAATATGATTATGGCCCTACTGAATATGCAACTACAT-GACCCTACTG
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGGTCCCTACTG
98741 AATATGCAACTATATGATT
62 AATATGCAACTATATGA-T
* * * * * *
98760 CCATACTGAATATGCAACTATACG--GCCCATACTGAATATGCAACTATATGATTCCAACCTGAA
1 CCCTACTGAATATGCAACTATATGATTCCC-TACTGAATATGCAACTATATGGTCCCTA-CTGAA
*
98823 TATACAACTATATGATT
64 TATGCAACTATATGA-T
* * * *
98840 CCCTGCTGATTATGCAACTATATGA--CCCATAGTGAATATGCAACTATAT-GACCCATACTGAA
1 CCCTACTGAATATGCAACTATATGATTCCC-TACTGAATATGCAACTATATGGTCCC-TACTGAA
98902 TATGCAACTATATGATT
64 TATGCAACTATATGA-T
* * * *
98919 CCCTACTGAATATGCAACTATATGATTATGGCCCTACTGATTATGCAATTATATGATTATAGCTC
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG---GT--CCC
* *
98984 TACTGAATATGCAATTACATGA-
57 TACTGAATATGCAACTATATGAT
* * * * *
99006 CCCTTCTGAATATGCAACTATATGATTGCCTACTAAATATGCAACTATATGATTCGCTACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
*
99071 ATGCAACTATATG-G
65 ATGCAACTATATGAT
* *
99085 CCCTACTGAATATGCAACTATATGATTCCCTACAGAATATGCAACTATATGATTCCCTACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
*
99150 ATGCAATTATATGATTAT
65 ATGCAACTATATG---AT
* * *
99168 GGCCCTACAGAATATGCAACTATATGATTCCCTACTGATTATGCAACTATATGATTCCCTACTGA
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGA
*
99233 ATATGCAACTATATGAC
63 ATATGCAACTATATGAT
* * *
99250 CCCTATTGAATATACAACTATATGATTCCCTACAGAATATGCAACTATATGG-CCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
99314 TGCAACTATATGATTAT
66 TGCAACTATATG---AT
** * *
99331 GGCCCTACTGAATATGCAACTGCATGA--CCCTACTGAATATGCAACTATATGATTCCCTAATGA
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGA
99394 ATATGCAACTATATGATT
63 ATATGCAACTATATGA-T
* ** * *
99412 CACTACTGAATATGCAACTATATG-GCCCCTACTGAATATACAACTATATGGCCCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
99476 TGCAACTATATGATT
66 TGCAACTATATGA-T
* *
99491 CCCTACTGAATATGCAACTATATGATTATGGCCCTGCTGAATATGCAACTATATGGCCCCTACTG
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGGTCCCTACTG
*
99556 AATGTGCAACTA-ATGATT
62 AATATGCAACTATATGA-T
* ** * *
99574 CCCTACTGAATATACAACTATATG-GCCCCTACTGAATATGCAAATATATGATTCCCTACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
*
99638 ATGCAACTATATTG-C
65 ATGCAACTATA-TGAT
* * *
99653 CCCTACTGAATATGCAACTATATGATTCCTTACTGAATATGCAACTATATGATTCCCTATTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
*
99718 ATGCAACTATATGAC
65 ATGCAACTATATGAT
* * *
99733 CCCTACTGAATATGCAACTATATGATTCCCTAATAAATATGCAACTATATGATTATGGCCCTACT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-----GTCCCTACT
99798 GAATATGCAACTATATGATTAT
61 GAATATGCAACTATATG---AT
* * * *
99820 GGCCCTACTGAATATGCAACTACATGA--CCTTACTGAATATGCAACTATATGATTCCTTACTGA
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGA
99883 ATATGCAACTATATGAAT
63 ATATGCAACTATATG-AT
* * * * * *
99901 CCATACTTACTATACAACTATATGATGGCCCTACTGAATATGCAACTATATGATTCCCTACTGAA
1 CCCTACTGAATATGCAACTATATGAT-TCCCTACTGAATATGCAACTATATG-GTCCCTACTGAA
99966 TATGCAACTATATGATT
64 TATGCAACTATATGA-T
* * *
99983 CCCTACTGAATATGCAACTATATGATTCCTTACTGAATATGCAACTATATGATTCCCTATTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
*
100048 ATGCAACTATATGAC
65 ATGCAACTATATGAT
* * * *
100063 CCCTACAGAATATGCAACTACATGA-CCCCTACTGAATATGCAACTATATGATTAAGGCCCTACT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-----GTCCCTACT
100127 GAATATGCAACTATATGATTAT
61 GAATATGCAACTATATG---AT
* * *
100149 GGCCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTACAT-GACCTTAC
1 --CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGGTCCCTAC
100213 TGAATATGCAACTATATGATT
60 TGAATATGCAACTATATGA-T
* *
100234 CCCTACTGAATATGCAACTATATTATTCCCTACTGAATATGCAACTATATGGCCCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
*
100299 TGCAATTATATGATT
66 TGCAACTATATGA-T
** *
100314 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGACCCCTACTAAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
100379 TGCAACTATATGATT
66 TGCAACTATATGA-T
* *
100394 CCCTACTGAATATGCAACTATATGAATCCCTACTGAATATGCAACTATAT-GACCCATACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCC-TACTGAAT
*
100458 ATGCAACTCTATGATT
65 ATGCAACTATATGA-T
* * *
100474 CCCTACTGAATATGCAACTACATGATTATGGCCCTACTAAATATGCAACTATATGATTATGGCCC
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG-----GTCCC
**
100539 TACTGAATATGCAACTATATGGC
57 TACTGAATATGCAACTATATGAT
100562 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATG-----A-A---TCCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
*
100618 TGCAACTATATGAC
66 TGCAACTATATGAT
**
100632 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGACCCCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
100697 TGCAACTATATGATT
66 TGCAACTATATGA-T
*
100712 CCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGATTATGGCCC
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG-----GTCCC
100777 TACTGAATATGCAACTATATGATT
57 TACTGAATATGCAACTATATGA-T
** *
100801 CCCTACTGAATATGCAACTATATGA--CCCTACTGAATATGCAACTATATGACACCCTAATGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
100864 ATGCAACTATATGATT
65 ATGCAACTATATGA-T
* * * * *
100880 ACCTACTAAATATGCAATTATATGATTCCCTACTGAATAT-CTAACTTTATGGT-CCTACTGAAC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGC-AACTATATGGTCCCTACTGAAT
100943 ATGCAACTATATGATT
65 ATGCAACTATATGA-T
* * * * * *
100959 CCTTACTGAATATGCAACTATATG--GCCCTACTGAATTTGCAACCATATGATTTCCTACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-GTCCCTACTGAAT
101022 ATGCAACTATATGA-
65 ATGCAACTATATGAT
* * * * *
101036 CCCTACTGAATATGCAACCATATG--GCCCTTCTGAATTTGAAACTATATGGT-CCTACTGAATA
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
*
101098 TGAAACTATATGAT
66 TGCAACTATATGAT
*
101112 -CCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGATGCCCTACTGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGT-CCCTACTGAAT
101176 ATGCAACTATATGATT
65 ATGCAACTATATGA-T
* * *
101192 TCCTACTGAATATGCAACTATATG--GCCACTACTGAATATGCAACTATATGATACCCTACTGAA
1 CCCTACTGAATATGCAACTATATGATTCC-CTACTGAATATGCAACTATATGGT-CCCTACTGAA
101255 TATGCAACTATATGAT
64 TATGCAACTATATGAT
* * * * * *
101271 GCCCTAGTGAATATGGAACCATATGATTCCCCACTGTATATGCAACTACATGGTCC
1 -CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCC
101327 TATGCTATAT
Statistics
Matches: 2570, Mismatches: 263, Indels: 279
0.83 0.08 0.09
Matches are distributed among these distances:
70 66 0.03
75 46 0.02
76 2 0.00
77 112 0.04
78 81 0.03
79 609 0.24
80 573 0.22
81 152 0.06
82 151 0.06
83 269 0.10
84 144 0.06
85 82 0.03
86 8 0.00
87 84 0.03
88 47 0.02
89 116 0.05
90 6 0.00
93 22 0.01
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (79 bp):
CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGGTCCCTACTGAATA
TGCAACTATATGAT
Found at i:98628 original size:53 final size:53
Alignment explanation
Indices: 98271--101318 Score: 3418
Period size: 53 Copynumber: 56.4 Consensus size: 53
98261 CTGAATATGG
*
98271 CCCTACTGAATATGCAAATATAAT-ATTATGGCCCTACTGAATATGCAACTATATGATTAT
1 CCCTACTGAATATGCAACTAT-ATGA-T-T--CCCTACTGAATATGCAACTATATG---AT
* * *
98331 GGCCCTACTGAATATGCAACTACATGA--CCCTCCTGAATATG-TACTATATGATT
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* ** *
98384 CCCAACTGAATATGCAACTATATG-GCCCCTACTAAATATGCAACTATATGAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * * *
98436 TCCTATTGAATATGCAACAATATGATTATGGCCCTACTGAATATGCAACTACATGA-
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGAT
* * *
98492 CCCTACTGAATATGCAACTATATGATTCGCTACTGAATTTGCAACTGTATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* * * *
98546 CCCTACAGAATATGCAACTATATG-GTCCCTATTGAATATGCAACTATTTGGA-
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATAT-GAT
* *
98598 CCCTACTGAATATGCAACTATATGATTCCCTACCGAATATGCAACTATATGAC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * * * *
98651 CCCTACTGAATATGCAATTATATGA-CCCCTACTAAATATACAACAATATGATTAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAAC--TAT-ATGAT
*
98706 GGCCCTACTGAATATGCAACTACATGA--CCCTACTGAATATGCAACTATATGATT
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* * *
98760 CCATACTGAATATGCAACTATACG--GCCCATACTGAATATGCAACTATATGAT
1 CCCTACTGAATATGCAACTATATGATTCCC-TACTGAATATGCAACTATATGAT
* * * * *
98812 TCCAACCTGAATATACAACTATATGATTCCCTGCTGATTATGCAACTATATGA-
1 CCCTA-CTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
*
98865 CCCATAGTGAATATGCAACTATATGA--CCCATACTGAATATGCAACTATATGATT
1 CCC-TACTGAATATGCAACTATATGATTCCC-TACTGAATATGCAACTATATGA-T
* *
98919 CCCTACTGAATATGCAACTATATGATTATGGCCCTACTGATTATGCAATTATATGATTAT
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG---AT
* * * *
98979 AGCTCTACTGAATATGCAATTACATGA--CCCTTCTGAATATGCAACTATATGATT
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* * * *
99033 GCCTACTAAATATGCAACTATATGATTCGCTACTGAATATGCAACTATATG-G
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
*
99085 CCCTACTGAATATGCAACTATATGATTCCCTACAGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* *
99139 CCCTACTGAATATGCAATTATATGATTATGGCCCTACAGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGA-T
* *
99197 CCCTACTGATTATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * * *
99250 CCCTATTGAATATACAACTATATGATTCCCTACAGAATATGCAACTATATG-G
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
**
99302 CCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTGCATGA-
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGAT
*
99358 CCCTACTGAATATGCAACTATATGATTCCCTAATGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* ** * **
99412 CACTACTGAATATGCAACTATATG-GCCCCTACTGAATATACAACTATATGGC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
99464 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGATTAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG---AT
* ** *
99520 GGCCCTGCTGAATATGCAACTATATG-GCCCCTACTGAATGTGCAACTA-ATGATT
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* ** *
99574 CCCTACTGAATATACAACTATATG-GCCCCTACTGAATATGCAAATATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
*
99627 CCCTACTGAATATGCAACTATAT--TGCCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGAT-TCCCTACTGAATATGCAACTATATGA-T
* * *
99680 CCTTACTGAATATGCAACTATATGATTCCCTATTGAATATGCAACTATATGAC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* *
99733 CCCTACTGAATATGCAACTATATGATTCCCTAATAAATATGCAACTATATGATTAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG---AT
*
99789 GGCCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTACATGA-
1 --CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGAT
* *
99847 CCTTACTGAATATGCAACTATATGATTCCTTACTGAATATGCAACTATATGAAT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATG-AT
* * * * *
99901 CCATACTTACTATACAACTATATGATGGCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGAT-TCCCTACTGAATATGCAACTATATGA-T
99956 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* * *
100010 CCTTACTGAATATGCAACTATATGATTCCCTATTGAATATGCAACTATATGAC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * *
100063 CCCTACAGAATATGCAACTACATGA-CCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
100116 AAGGCCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGATTAT
1 ----CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG---AT
* *
100180 GGCCCTACTGAATATGCAACTACATGA--CCTTACTGAATATGCAACTATATGATT
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* **
100234 CCCTACTGAATATGCAACTATATTATTCCCTACTGAATATGCAACTATATGGC
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
*
100287 CCCTACTGAATATGCAATTATATGATTCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* *
100341 CCCTACTGAATATGCAACTATATGA-CCCCTACTAAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
*
100394 CCCTACTGAATATGCAACTATATGAATCCCTACTGAATATGCAACTATATGA-
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* *
100446 CCCATACTGAATATGCAACTCTATGATTCCCTACTGAATATGCAACTACATGATTAT
1 CCC-TACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACT--AT-ATGAT
* **
100503 GGCCCTACTAAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGGC
1 --CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATGAT
100562 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATG-------A--AT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
*
100606 CCCTACTGAATATGCAACTATATGA-CCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
*
100659 CCCTACTGAATATGCAACTATATGA-CCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
100712 CCCTACTGAATATGCAACTATATGATTATGGCCCTACTGAATATGCAACTATATGATTAT
1 CCCTACTGAATATGCAACTATATGA-T-T--CCCTACTGAATATGCAACTATATG---AT
100772 GGCCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-
1 --CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
** *
100826 CCCTACTGAATATGCAACTATATGACACCCTAATGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* * * * *
100880 ACCTACTAAATATGCAATTATATGATTCCCTACTGAATAT-CTAACTTTATGGT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGC-AACTATATGAT
* * *
100933 -CCTACTGAACATGCAACTATATGATTCCTTACTGAATATGCAACTATATG-G
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * *
100984 CCCTACTGAATTTGCAACCATATGATTTCCTACTGAATATGCAACTATATGA-
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
* * * * * *
101036 CCCTACTGAATATGCAACCATATG--GCCCTTCTGAATTTGAAACTATATGGT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
*
101087 -CCTACTGAATATGAAACTATATGA-T-CCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
*
101138 CCCTACTGAATATGCAACTATATGATGCCCTACTGAATATGCAACTATATGATT
1 CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* *
101192 TCCTACTGAATATGCAACTATATG--GCCACTACTGAATATGCAACTATATGAT
1 CCCTACTGAATATGCAACTATATGATTCC-CTACTGAATATGCAACTATATGAT
* * * *
101244 ACCCTACTGAATATGCAACTATATGATGCCCTAGTGAATATGGAACCATATGATT
1 -CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGA-T
* *
101299 CCCCACTGTATATGCAACTA
1 CCCTACTGAATATGCAACTA
101319 CATGGTCCTA
Statistics
Matches: 2599, Mismatches: 240, Indels: 302
0.83 0.08 0.10
Matches are distributed among these distances:
43 14 0.01
44 25 0.01
46 1 0.00
50 62 0.02
51 26 0.01
52 579 0.22
53 684 0.26
54 480 0.18
55 73 0.03
56 175 0.07
57 113 0.04
58 185 0.07
59 11 0.00
60 7 0.00
61 5 0.00
62 157 0.06
64 1 0.00
65 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (53 bp):
CCCTACTGAATATGCAACTATATGATTCCCTACTGAATATGCAACTATATGAT
Found at i:100202 original size:15 final size:15
Alignment explanation
Indices: 100091--100202 Score: 59
Period size: 15 Copynumber: 7.3 Consensus size: 15
100081 TACATGACCC
100091 CTACTGAATATGCAA
1 CTACTGAATATGCAA
* * * *
100106 CTATATGATTAAGGC-C
1 CTA-CTGAAT-ATGCAA
100122 CTACTGAATATGCAA
1 CTACTGAATATGCAA
* * *
100137 CTATATGATTATGGC-C
1 CTA-CTGAATAT-GCAA
100153 CTACTGAATATGCAA
1 CTACTGAATATGCAA
* * *
100168 CTATATGATTATGGC-C
1 CTA-CTGAATAT-GCAA
100184 CTACTGAATATGCAA
1 CTACTGAATATGCAA
100199 CTAC
1 CTAC
100203 ATGACCTTAC
Statistics
Matches: 68, Mismatches: 20, Indels: 18
0.64 0.19 0.17
Matches are distributed among these distances:
14 7 0.10
15 29 0.43
16 25 0.37
17 7 0.10
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (15 bp):
CTACTGAATATGCAA
Found at i:100603 original size:17 final size:17
Alignment explanation
Indices: 100581--100619 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
100571 ATATGCAACT
*
100581 ATATGATTCCCTACTGA
1 ATATGAATCCCTACTGA
100598 ATATGAATCCCTACTGA
1 ATATGAATCCCTACTGA
100615 ATATG
1 ATATG
100620 CAACTATATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (17 bp):
ATATGAATCCCTACTGA
Found at i:106091 original size:2 final size:2
Alignment explanation
Indices: 106079--106118 Score: 53
Period size: 2 Copynumber: 18.5 Consensus size: 2
106069 ATCATAAATC
106079 AT AT AT CAT AT AT CAT AT AT CAT AT AT AT AT AT AT AT AT A
1 AT AT AT -AT AT AT -AT AT AT -AT AT AT AT AT AT AT AT AT A
106119 ATGATAACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 29 0.83
3 6 0.17
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:106103 original size:7 final size:7
Alignment explanation
Indices: 106062--106117 Score: 80
Period size: 7 Copynumber: 8.3 Consensus size: 7
106052 TGTTTGTTAA
*
106062 ATCATAA
1 ATCATAT
*
106069 ATCATAA
1 ATCATAT
106076 ATCATAT
1 ATCATAT
106083 ATCATAT
1 ATCATAT
106090 ATCATAT
1 ATCATAT
106097 ATCATAT
1 ATCATAT
106104 AT-ATAT
1 ATCATAT
106110 AT-ATAT
1 ATCATAT
106116 AT
1 AT
106118 AATGATAACA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
6 12 0.25
7 36 0.75
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (7 bp):
ATCATAT
Found at i:107236 original size:321 final size:318
Alignment explanation
Indices: 106516--107328 Score: 962
Period size: 321 Copynumber: 2.5 Consensus size: 318
106506 TCTTGTTTTA
* * *
106516 AATATCATTTTTCTATTTTTTTCCGAATCT-ATTTCTT-ATCAAATCGAAACAATATTCAGATGC
1 AATATCATTTTTCCATTTTTTT-CGAAT-TAATTT-TTAATTAAATCGAAACAAGATTCAGATGC
* *
106579 TCGTAAAAACAAATCCTTAAATCTAATGTGGCTGAGAGTCTGAGATTGGTTAGATGAATATAGAT
63 TCGTAAAAACAAATCCTTAAATCCAATGTGGCT--GA--C--A-TTTGGTTAGATGAATATAGAT
* * *
106644 ATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAATGCGTTTTT
121 ATTTCAAGAAGTCTTTC-GCCAAAAATCATGCAAAACTGAGCCGGGG-CCCCGAAACGCATTTTT
* * * *
106709 AGCCCCAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAATCTGACCCGGAATTTTTTTTCT
184 AGCCCAAAAACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAGTTTTTTTCT
* * * * *
106774 GAATTTTTTGTCACGATACTCAGAAAAAATTTATAATTCAACACCAAAAAGATTGATTGTTCACG
249 CAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACACAAAAAAGATTGATTGTTCACG
*
106839 CTTTT
314 CTTCT
* *
106844 AATATCATTTTTCCAATTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTT
1 AATATCATTTTTCC-ATTTTTTTCGAATTAATTTTTAATTAAATCGAAACAAGATTCAGATGCTC
* * *
106909 GTAAAAACAAATCCTTATATCCAATGTGGCTGACATTTGGTTTGATGAACATAGATATTTCAAGA
65 GTAAAAACAAATCCTTAAATCCAATGTGGCTGACATTTGGTTAGATGAATATAGATATTTCAAGA
* * *
106974 AGTCTTTGCGCCAAAAATCATGCAAAATTGAGTC-GGG-CTCGAGAACGCATTTTTAG-CCAAAA
130 AGTCTTT-CGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGA-AACGCATTTTTAGCCCAAAA
* *
107036 ACCGTGATGGTTAGTACACGA-TTTCGGCTAAAAACTGA-TCGAAAAAGTTTTTTTCTCAATTTT
193 ACCATGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCG--AAAGTTTTTTTCTCAATTTT
*
107099 TTGCCACAATACTCA-AAAAAATATATAATTCAACGCAAAAAAGATTGACGGGCTT-TTCACGCT
256 TTGCCACAATACTCAGAAAAAATATATAATTCAACACAAAAAAGATTGA-----TTGTTCACGCT
107162 TCT
316 TCT
* * *
107165 AATATCGTTTTTCCAGTTTTTTCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCCTC
1 AATATCATTTTTCCATTTTTTTCGAATTAATTTTTAATTAAATCGAAACAAGATTCAGATG-CTC
* * * ** * *
107230 GTAAAAACAAATACTTAAATCGAACGTGGCTGGGATTTTGTTCGATGAATATAGATATTTCAAGG
65 GTAAAAACAAATCCTTAAATCCAATGTGGCTGACATTTGGTTAGATGAATATAGATATTTCAA-G
* *
107295 AA-TATTTACGTCAAAAATCATGCAAAACTGAGCC
129 AAGTCTTT-CGCCAAAAATCATGCAAAACTGAGCC
107329 AGTGCTAAAA
Statistics
Matches: 423, Mismatches: 48, Indels: 35
0.84 0.09 0.07
Matches are distributed among these distances:
316 2 0.00
317 46 0.11
318 59 0.14
319 11 0.03
320 47 0.11
321 162 0.38
322 7 0.02
324 1 0.00
326 2 0.00
327 2 0.00
328 76 0.18
329 8 0.02
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (318 bp):
AATATCATTTTTCCATTTTTTTCGAATTAATTTTTAATTAAATCGAAACAAGATTCAGATGCTCG
TAAAAACAAATCCTTAAATCCAATGTGGCTGACATTTGGTTAGATGAATATAGATATTTCAAGAA
GTCTTTCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCATTTTTAGCCCAAAAACC
ATGATGGTTAGTACACGATTTTCGGCTAAAAACTGACCCGAAAGTTTTTTTCTCAATTTTTTGCC
ACAATACTCAGAAAAAATATATAATTCAACACAAAAAAGATTGATTGTTCACGCTTCT
Found at i:107851 original size:29 final size:29
Alignment explanation
Indices: 107792--107851 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
107782 ATAATAATAT
* * *
107792 TAATAAAAAAGTTGAATCATCTAAATAAA
1 TAATAAAAAAGCTAAATCATCTAAAAAAA
*
107821 TAATAAAAAAGCTAAATGA-CTAAAAAGAA
1 TAATAAAAAAGCTAAATCATCTAAAAA-AA
107850 TA
1 TA
107852 CTTCTTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.62, C:0.07, G:0.08, T:0.23
Consensus pattern (29 bp):
TAATAAAAAAGCTAAATCATCTAAAAAAA
Found at i:114390 original size:25 final size:25
Alignment explanation
Indices: 114359--114407 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
114349 CCAACCAGTA
*
114359 TTGAGCACTCTCGCTCGGTCTCTAT
1 TTGAGCACTCTCGCTCAGTCTCTAT
114384 TTGAGCACTCTCGCTCAGTCTCTA
1 TTGAGCACTCTCGCTCAGTCTCTA
114408 CAAACCAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.14, C:0.33, G:0.18, T:0.35
Consensus pattern (25 bp):
TTGAGCACTCTCGCTCAGTCTCTAT
Found at i:116058 original size:31 final size:30
Alignment explanation
Indices: 115993--116071 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 30
115983 ATGTCACTAT
*
115993 TTTTTGGTACACATGGCGTGATACGTGTCAC
1 TTTTTGGTACACGTGGCGTGATAC-TGTCAC
*
116024 TTTTTGGTACACGTGGCGTGTCATA-TGTCGC
1 TTTTTGGTACACGTGGCGTG--ATACTGTCAC
*
116055 TTTTTGGCACACGTGGC
1 TTTTTGGTACACGTGGC
116072 ATACCACGTC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
31 40 0.93
33 3 0.07
ACGTcount: A:0.15, C:0.20, G:0.28, T:0.37
Consensus pattern (30 bp):
TTTTTGGTACACGTGGCGTGATACTGTCAC
Found at i:140485 original size:26 final size:28
Alignment explanation
Indices: 140432--140486 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
140422 TTGACCCCTT
140432 TCAGCACACATGTGTGCCTTCTTCTCTC
1 TCAGCACACATGTGTGCCTTCTTCTCTC
140460 TCAGCACACATGTGTGCCTTCTTCTCT
1 TCAGCACACATGTGTGCCTTCTTCTCT
140487 TCTCTGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.15, C:0.35, G:0.15, T:0.36
Consensus pattern (28 bp):
TCAGCACACATGTGTGCCTTCTTCTCTC
Found at i:166798 original size:29 final size:29
Alignment explanation
Indices: 166733--166807 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
166723 TAGCCTGAAG
*
166733 GGGTAAAACGTCCCAAAATTGAAATTTAAA
1 GGGTAAAACGT-CCAAAATTGAAAGTTAAA
* * *
166763 AGGTAAAATGTCCAAAATTG-AAGTTCAA
1 GGGTAAAACGTCCAAAATTGAAAGTTAAA
166791 GGGATAAAACGTCCAAA
1 GGG-TAAAACGTCCAAA
166808 CACTACAAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
28 8 0.21
29 21 0.55
30 9 0.24
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (29 bp):
GGGTAAAACGTCCAAAATTGAAAGTTAAA
Found at i:169744 original size:27 final size:26
Alignment explanation
Indices: 169701--169753 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
169691 ATTTAAAATG
169701 ATAGTAAAAATAGTAAAAGAAGATTTT
1 ATAGTAAAAATAGT-AAAGAAGATTTT
* *
169728 ATAGTGAAAATCA-TAAAGAATATTTT
1 ATAGTAAAAAT-AGTAAAGAAGATTTT
169754 GGAAGATTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 11 0.48
27 11 0.48
28 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.32
Consensus pattern (26 bp):
ATAGTAAAAATAGTAAAGAAGATTTT
Found at i:181993 original size:29 final size:27
Alignment explanation
Indices: 181950--182010 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 27
181940 ATAGATCAGT
181950 CTTTTATTTATTCTTTTTTCTTTTTTTCTA
1 CTTTTATTTATTC--TTTTC-TTTTTTCTA
181980 -TTTTACTTT-TTCTTTTCTTTTTTCTA
1 CTTTTA-TTTATTCTTTTCTTTTTTCTA
182006 CTTTT
1 CTTTT
182011 TTCTTCTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
26 9 0.31
27 9 0.31
29 8 0.28
30 3 0.10
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.77
Consensus pattern (27 bp):
CTTTTATTTATTCTTTTCTTTTTTCTA
Found at i:182012 original size:22 final size:23
Alignment explanation
Indices: 181962--182015 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
181952 TTTATTTATT
*
181962 CTTTTTTCTTTTTTTCTATTTTA
1 CTTTTTTCTTTTTTTCTATTCTA
181985 C-TTTTTCTTTTCTTT-T-TTCTA
1 CTTTTTTCTTTT-TTTCTATTCTA
182006 CTTTTTTCTT
1 CTTTTTTCTT
182016 CTCATTCCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 5 0.18
22 19 0.68
23 4 0.14
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (23 bp):
CTTTTTTCTTTTTTTCTATTCTA
Found at i:187446 original size:16 final size:15
Alignment explanation
Indices: 187425--187455 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
187415 GAAGCAATAA
187425 AGAGAAAGAAAGAAAG
1 AGAGAAA-AAAGAAAG
187441 AGAGAAAAAAGAAAG
1 AGAGAAAAAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAAGAAAG
Done.