Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016374.1 Corchorus olitorius cultivar O-4 contig16407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148203

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2412--2438
3
9.0
3
100
0
54
33
0
0
66
0.92
2750--2865
60
1.9
59
96
1
214
30
20
14
34
1.93
3608--3638
2
15.5
2
100
0
62
48
0
0
51
1.00
12516--12559
10
4.1
11
86
13
65
56
0
0
43
0.99
12520--12558
7
5.4
7
82
17
53
58
0
0
41
0.98
12520--12556
5
7.6
5
82
17
51
59
0
0
40
0.97
12516--12551
17
2.1
17
90
10
56
58
0
0
41
0.98
15825--15891
27
2.5
27
95
0
116
34
10
31
23
1.89
24343--24419
38
2.0
38
100
0
154
32
15
10
41
1.81
50488--50512
12
2.1
12
100
0
50
36
16
0
48
1.46
55389--55422
17
2.0
17
88
0
50
58
2
32
5
1.37
63633--63690
27
2.1
28
84
6
75
37
3
20
37
1.70
71504--71609
51
2.1
51
98
0
203
23
13
12
50
1.74
71555--73276
873
2.0
875
96
0
3214
30
15
16
37
1.90
73675--73850
90
2.0
86
93
4
298
35
27
12
23
1.91
87905--87929
12
2.1
12
100
0
50
20
0
0
80
0.72
90045--90081
4
9.2
4
100
0
74
0
24
0
75
0.80
105202--105273
24
3.0
24
91
0
117
38
11
29
20
1.87
113180--113314
68
2.0
68
85
0
180
35
19
21
23
1.96
124608--124643
18
2.0
18
94
0
63
11
30
22
36
1.89
127517--127550
5
6.8
5
96
0
59
64
0
35
0
0.94
143089--143263
84
2.0
87
87
4
257
39
8
18
33
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145343--145375
16
2.1
16
100
0
66
24
6
21
48
1.72

Tables:   1

The End!