Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016376.1 Corchorus olitorius cultivar O-4 contig16409, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27800

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--540
41
13.3
41
87
5
724
25
15
19
40
1.90
1--540
81
6.7
82
87
4
749
25
15
19
40
1.90
545--620
38
2.0
38
89
0
116
19
19
19
40
1.91
585--842
50
5.1
50
89
3
385
25
18
17
39
1.91
1046--1083
2
19.0
2
94
0
67
52
0
47
0
1.00
10724--10748
2
12.5
2
100
0
50
48
0
0
52
1.00
11964--12039
31
2.4
32
82
6
102
32
11
19
35
1.88
23787--23815
3
10.0
3
92
7
51
0
34
0
65
0.93
27598--27691
43
2.2
43
98
1
179
27
19
14
38
1.91

Tables:   1

The End!