Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016377.1 Corchorus olitorius cultivar O-4 contig16410, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68736

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2771--2954
69
2.6
72
80
9
234
40
16
28
13
1.87
2771--2957
36
5.3
36
82
6
220
40
17
28
13
1.87
17335--17397
12
5.2
12
73
16
58
85
14
0
0
0.59
17337--17394
5
11.8
5
90
7
84
84
15
0
0
0.62
21621--21680
19
3.0
20
79
16
61
38
18
6
36
1.77
23111--23211
30
3.2
30
65
20
78
28
18
15
36
1.92
23948--23984
2
17.5
2
89
10
56
45
5
0
48
1.25
38259--38293
17
2.1
17
100
0
70
40
5
17
37
1.73
48931--48964
14
2.3
15
90
10
52
29
0
0
70
0.87
50441--50480
21
1.9
21
89
0
62
40
7
30
22
1.81
59209--59266
29
2.0
29
96
0
107
13
12
20
53
1.72
62521--62651
63
2.1
63
100
0
262
43
9
16
30
1.79

Tables:   1

The End!