Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016378.1 Corchorus olitorius cultivar O-4 contig16411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151586

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9606--9648
2
22.0
2
95
4
79
48
0
0
51
1.00
9829--9866
11
3.5
11
85
10
51
57
2
0
39
1.12
19768--19882
60
1.9
60
83
3
151
41
21
12
24
1.87
21755--21808
25
2.2
25
100
0
108
31
18
12
37
1.89
23110--23229
16
7.1
17
68
23
60
47
1
1
49
1.21
23256--23330
35
2.1
35
95
0
132
42
18
16
22
1.88
33196--33238
17
2.5
17
88
0
59
20
20
20
37
1.95
33213--33253
17
2.4
17
87
0
55
24
17
19
39
1.92
56501--56542
22
1.9
22
95
0
75
54
7
4
33
1.49
56835--57088
122
2.0
128
88
6
385
37
10
2
50
1.49
57010--57053
22
2.0
22
81
4
52
22
11
2
63
1.38
61482--61558
40
1.9
40
100
0
154
19
25
11
42
1.85
65272--65323
26
2.0
27
88
3
79
36
0
23
40
1.55
67891--67949
29
2.0
29
100
0
118
13
6
30
49
1.68
67948--67987
2
20.0
2
100
0
80
50
0
0
50
1.00
91459--91495
2
19.0
2
94
5
67
51
0
0
48
1.00
92865--92893
12
2.3
13
94
5
51
72
0
0
27
0.85
92858--92902
21
2.1
21
84
8
56
71
0
0
28
0.87
97778--97814
18
2.0
20
89
10
60
32
16
29
21
1.95
104328--104362
18
2.0
17
88
5
52
74
0
14
11
1.08
104519--104570
19
2.7
19
96
0
95
42
13
15
28
1.85
105623--105656
3
11.3
3
87
0
50
61
2
2
32
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108440--108495
26
2.2
25
81
6
67
37
10
10
41
1.75
108451--108506
26
2.2
26
93
3
96
32
7
10
50
1.64
117452--117539
44
2.0
44
97
0
167
28
21
20
29
1.98
118165--118191
6
4.5
6
100
0
54
33
29
18
18
1.95
122324--122358
14
2.4
15
95
4
63
31
0
14
54
1.40
123036--123204
31
5.4
31
89
2
232
30
28
20
19
1.97
130757--130943
92
2.0
91
89
8
290
25
22
8
43
1.80
131113--131180
31
2.3
30
84
5
84
51
8
16
23
1.72
131300--131376
30
2.5
31
91
2
120
36
16
9
37
1.81
131325--131437
60
1.9
60
87
1
165
31
16
12
38
1.86
132433--132542
31
3.6
31
82
2
125
40
10
16
31
1.83
132671--132737
31
2.2
31
92
5
111
20
19
11
47
1.81
143611--143635
1
25.0
1
100
0
50
0
0
0
100
0.00
150735--151586
339
2.5
341
94
1
1464
36
19
13
31
1.89

Tables:   1

The End!