Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016380.1 Corchorus olitorius cultivar O-4 contig16413, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79350

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--2220
338
6.6
339
83
6
2467
35
18
14
31
1.90
4--3246
678
4.8
668
78
10
2892
35
18
14
32
1.90
2196--2249
27
2.0
27
100
0
108
40
22
18
18
1.91
2271--3531
325
3.9
316
80
6
1214
35
16
13
33
1.89
3699--3747
24
2.1
24
85
11
66
20
16
4
59
1.53
5899--5929
16
1.9
16
93
0
53
67
6
12
12
1.40
7871--7959
46
2.0
43
85
8
117
29
8
16
44
1.78
16635--16666
15
2.1
16
88
11
50
40
25
0
34
1.56
28227--28282
22
2.5
22
85
5
78
44
5
7
42
1.54
28243--28349
44
2.4
44
77
0
115
45
13
6
34
1.69
28367--28391
13
1.9
13
100
0
50
44
0
8
48
1.32
28691--28736
24
1.9
24
95
0
83
26
10
23
39
1.88
29096--29138
14
2.9
15
79
10
52
32
2
25
39
1.69
29093--29810
362
1.9
365
86
7
1015
37
8
18
35
1.82
30745--30778
16
2.1
16
100
0
68
23
17
35
23
1.95
31806--31832
1
27.0
1
100
0
54
0
0
0
100
0.00
35764--35815
2
26.0
2
92
7
88
50
48
1
0
1.12
40380--40410
7
4.4
7
95
0
53
16
12
38
32
1.86
41469--41512
9
4.9
9
94
0
79
34
36
0
29
1.58
41461--41512
18
2.9
18
91
0
86
32
40
0
26
1.57
41461--41512
27
1.9
27
88
0
77
32
40
0
26
1.57
43028--43090
15
4.2
15
73
4
56
7
49
4
38
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44236--44268
15
2.1
15
94
5
57
84
3
12
0
0.72
52245--52270
6
4.3
6
100
0
52
30
19
30
19
1.96
66884--66920
15
2.5
15
90
0
56
0
10
37
51
1.37
68573--68610
20
1.9
20
94
0
67
50
10
18
21
1.76
76353--76406
27
2.0
27
96
0
99
62
1
12
22
1.39

Tables:   1

The End!