Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016382.1 Corchorus olitorius cultivar O-4 contig16415, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117684

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
932--2191
332
3.8
324
78
8
1267
33
14
15
35
1.89
1906--2679
308
2.5
300
79
7
835
31
14
16
37
1.89
4597--4630
2
17.0
2
100
0
68
50
0
0
50
1.00
7478--7527
3
15.3
3
95
4
64
62
0
38
0
0.96
16126--16183
22
2.6
22
100
0
116
3
13
46
36
1.61
16184--16217
2
17.0
2
100
0
68
50
0
50
0
1.00
17365--17393
2
14.5
2
100
0
58
0
0
48
51
1.00
28224--28278
27
2.0
27
96
0
101
38
3
16
41
1.66
29052--29081
14
2.1
15
93
6
53
30
0
20
50
1.49
30670--30751
38
2.1
38
86
6
110
20
23
12
43
1.85
32043--32109
22
3.0
22
100
0
134
40
13
17
28
1.88
33738--33781
22
2.0
22
86
0
61
27
11
6
54
1.61
38992--39018
12
2.2
12
100
0
54
25
40
0
33
1.56
52582--52622
21
1.9
21
85
5
55
24
12
29
34
1.91
57765--57789
2
12.5
2
100
0
50
0
52
0
48
1.00
59535--59585
25
2.0
25
96
0
93
33
11
9
45
1.74
77043--77079
14
2.5
15
86
4
58
86
0
13
0
0.57
77042--77079
13
2.8
13
88
4
58
86
0
13
0
0.56
79047--79105
19
3.2
19
72
18
70
25
25
8
40
1.83
79034--79113
36
2.2
36
100
0
160
27
20
8
43
1.81
79034--79113
19
4.4
18
71
18
60
27
20
8
43
1.81
82212--82243
3
10.7
3
93
0
55
34
37
0
28
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88733--88788
4
14.0
4
100
0
112
0
25
0
75
0.81
90878--90924
18
2.6
18
89
0
67
4
14
40
40
1.66
91557--91598
21
2.0
20
86
4
57
21
0
59
19
1.38
91778--91813
3
12.0
3
87
0
54
2
0
33
63
1.08
91787--91822
15
2.4
15
90
0
54
5
0
33
61
1.19
95834--95882
25
2.0
25
95
0
89
30
6
18
44
1.74
96587--96650
8
7.8
8
77
6
56
46
14
1
37
1.53
96588--96653
18
3.6
18
76
8
60
46
13
1
37
1.53
96622--96653
6
5.3
6
92
0
55
50
18
0
31
1.48
96600--96653
20
2.8
20
86
5
67
48
14
1
35
1.55
99504--99528
2
12.5
2
100
0
50
48
0
0
52
1.00
102484--102530
22
2.1
22
100
0
94
17
36
4
42
1.68
110225--110324
44
2.2
46
85
8
143
16
18
18
48
1.82
110221--110323
22
4.9
21
70
11
61
15
19
17
47
1.83
112100--112140
21
2.0
20
90
4
64
21
21
9
46
1.80
112672--112863
67
2.9
65
86
3
269
50
10
17
21
1.76
112795--113137
74
4.5
74
89
6
490
51
11
13
23
1.74
117625--117668
2
22.0
2
100
0
88
50
0
0
50
1.00

Tables:   1

The End!