genome.fa.s16384.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016384.1 Corchorus olitorius cultivar O-4 contig16417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156817

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--4504	321	14.0	321	85	3	5757	34	13	17	34	1.89
1--5130	645	8.0	643	87	3	7091	34	13	17	34	1.89
4509--5130	321	1.9	322	87	1	917	33	13	17	35	1.89
5494--5536	19	2.3	18	80	11	50	48	16	25	9	1.75
5952--5995	19	2.3	19	80	0	52	45	15	29	9	1.77
5142--6198	459	2.4	444	88	6	1569	29	23	24	22	1.99
6518--7294	330	2.4	323	80	7	899	34	15	15	34	1.89
6518--7294	326	2.4	326	81	6	898	34	15	15	34	1.89
7637--7807	39	4.4	39	80	5	166	28	20	18	33	1.96
8034--8123	45	2.0	44	89	4	137	26	18	18	35	1.95
20954--20994	22	1.9	21	85	5	55	36	0	4	58	1.20
26092--26125	13	2.5	13	95	4	59	29	20	8	41	1.82
32095--32165	37	1.9	37	94	0	124	38	8	16	36	1.80
33462--33513	26	2.0	25	81	3	59	57	5	5	30	1.46
42425--42480	19	2.8	19	86	5	76	35	10	23	30	1.89
78779--78817	2	19.5	2	100	0	78	48	0	0	51	1.00
79713--79824	50	2.2	50	100	0	224	35	14	16	33	1.88
86230--86258	14	2.1	14	100	0	58	41	6	13	37	1.72
106737--106826	45	2.1	43	87	6	128	38	21	4	35	1.73
121314--121365	24	2.2	23	83	10	68	36	0	3	59	1.16
133342--133496	33	4.7	33	83	4	188	5	31	11	50	1.62
133387--133445	18	3.5	17	68	15	50	5	30	8	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133373--133496	15	7.7	15	68	16	70	6	33	10	50	1.62
144889--145043	52	2.9	53	98	1	294	34	29	17	18	1.94
146128--146246	59	2.0	59	85	6	161	37	10	10	42	1.72
150247--150449	81	2.5	78	84	8	255	21	24	19	35	1.96
152209--152256	22	2.1	24	84	7	64	37	0	6	56	1.25
152320--152361	20	2.1	20	82	8	50	33	19	26	21	1.97
152347--152375	6	5.0	6	91	8	51	17	34	34	13	1.89
155570--155636	26	2.7	26	77	13	77	28	22	7	41	1.80
155271--156140	441	2.0	441	96	0	1625	29	15	15	40	1.87

Tables:   1

The End!