Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016388.1 Corchorus olitorius cultivar O-4 contig16421, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27690

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2682--2706
5
5.0
5
100
0
50
20
0
0
80
0.72
3883--3912
13
2.2
13
94
5
51
43
23
6
26
1.78
6073--6123
15
3.4
15
68
10
50
50
7
3
37
1.50
11993--12040
25
1.9
25
83
8
62
43
14
10
31
1.79
12335--12479
60
2.4
59
80
6
175
31
12
15
40
1.84
12638--12704
18
3.8
19
72
20
56
47
2
2
46
1.33
12688--12758
35
2.1
34
84
12
92
45
9
4
40
1.57
15811--15973
60
2.7
60
91
1
247
36
19
19
25
1.95
15871--15979
31
3.6
31
69
18
93
36
20
20
22
1.95
16024--16127
31
3.4
31
68
15
90
29
18
17
34
1.94
24839--24865
6
4.5
6
100
0
54
0
48
0
51
1.00
25289--25424
47
2.9
45
88
10
188
37
4
12
45
1.62
26611--26672
25
2.6
24
87
5
81
59
4
6
29
1.43

Tables:   1

The End!