Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01016389.1 Corchorus olitorius cultivar O-4 contig16422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3180
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:269 original size:14 final size:13

Alignment explanation


    Indices: 237--271  Score: 52
    Period size: 14  Copynumber: 2.5  Consensus size: 13

        227 TTTTTATAAT

                         
        237 TATTTTATTTTTA
          1 TATTTTATTTTTA

                          
        250 TCATTTTATTTTTA
          1 T-ATTTTATTTTTA

                    
        264 CTATTTTA
          1 -TATTTTA

        272 ATTTAAAAGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  13    1  0.05
  14   18  0.90
  15    1  0.05

ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71


Consensus pattern (13 bp):   
TATTTTATTTTTA
Done.