Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016391.1 Corchorus olitorius cultivar O-4 contig16424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88297

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9472--9523
27
1.9
27
92
0
86
21
15
23
40
1.91
24276--24342
31
2.2
30
84
10
84
50
8
16
23
1.73
24460--24538
31
2.5
31
89
0
122
36
17
8
36
1.81
24514--24599
29
2.8
31
82
5
104
27
17
15
39
1.89
25572--25708
31
4.5
31
83
3
116
39
14
14
31
1.86
25569--25681
60
1.9
60
86
0
163
39
15
14
30
1.86
25838--25904
31
2.2
31
89
5
102
22
19
10
47
1.79
61133--61162
14
2.1
14
100
0
60
13
6
43
36
1.70
61935--61991
27
2.2
26
90
3
87
33
8
21
36
1.84
78844--79006
82
2.0
83
85
4
224
32
10
17
39
1.84
78925--82960
332
12.2
331
77
10
3474
32
14
16
35
1.90
82975--85230
334
6.9
334
87
5
3075
33
14
17
34
1.90
84317--86192
333
5.7
333
89
4
2799
33
14
17
34
1.91
85245--86192
335
2.8
331
93
2
1587
32
15
17
34
1.91
82975--86825
976
4.0
974
88
4
5219
33
14
17
34
1.91

Tables:   1

The End!