Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016392.1 Corchorus olitorius cultivar O-4 contig16425, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102210

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
415--439
12
2.1
12
100
0
50
56
0
24
20
1.43
11--1011
335
3.0
333
79
8
1286
32
14
17
34
1.91
3076--5114
333
6.3
320
80
8
1991
32
15
17
34
1.91
19592--19671
38
2.1
39
86
6
110
25
11
15
48
1.77
20547--20624
3
26.0
3
89
5
113
34
0
3
61
1.14
28468--28500
2
16.5
2
93
0
57
48
0
0
51
1.00
30635--30680
2
23.0
2
81
0
56
52
0
6
41
1.27
30637--30685
12
4.0
12
86
2
62
51
0
10
38
1.36
40019--40063
14
3.2
14
74
0
54
66
0
13
20
1.24
44897--44931
2
17.5
2
100
0
70
48
0
0
51
1.00
52110--52189
41
2.0
41
97
0
151
45
25
8
21
1.80
52379--52409
16
1.9
16
100
0
62
48
0
0
51
1.00
71271--71297
12
2.2
12
100
0
54
7
0
14
77
0.97
98016--98242
122
1.9
119
86
8
325
30
12
16
40
1.86
99319--99391
29
2.5
29
88
2
110
8
28
30
32
1.86
99523--99678
85
1.8
86
93
2
271
28
19
14
36
1.92
101232--101450
92
2.4
92
96
0
402
34
13
21
31
1.92

Tables:   1

The End!