Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01016398.1 Corchorus olitorius cultivar O-4 contig16431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75581
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Found at i:1297 original size:4 final size:4
Alignment explanation
Indices: 1288--1312 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1278 GCACCCAACG
1288 TCTT TCTT TCTT TCTT TCTT TCTT T
1 TCTT TCTT TCTT TCTT TCTT TCTT T
1313 TTCCTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:13890 original size:33 final size:33
Alignment explanation
Indices: 13851--14146 Score: 268
Period size: 33 Copynumber: 8.7 Consensus size: 33
13841 AGCTACTGCC
* *
13851 GCCTCGGTCTTTACCGGCTCTACCTTGGCTACT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
* * * *
13884 TCCTCGGCCTTTGCTGGCTCTACCTTGGCTACTACT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGG---CTACT
*
13920 GCCTCGGTCTTTGCCGGCTCCACCGTGGCTACT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
* ** *
13953 GCCTCGGGCTTTGCCTCCTCTACCTTGGCCACTACT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGG---CTACT
* * * *
13989 GCCTCAGTCTTTTCCGCCTCTACCTTGGCTACTACT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGG---CTACT
*
14025 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTGCT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
* * *
14058 GCCTCGGGCTTTGCCGGTTCTACCGTGGCTGCT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
* * * * *
14091 GCCTCGATCTTTACTGGCTCTGCCGTGGCTGCT
1 GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
* **
14124 GCCTCCGTCTTTGGTGGCTCTAC
1 GCCTCGGTCTTTGCCGGCTCTAC
14147 AATGGGTTCT
Statistics
Matches: 220, Mismatches: 37, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
33 132 0.60
36 88 0.40
ACGTcount: A:0.07, C:0.37, G:0.24, T:0.32
Consensus pattern (33 bp):
GCCTCGGTCTTTGCCGGCTCTACCGTGGCTACT
Found at i:13926 original size:69 final size:69
Alignment explanation
Indices: 13842--14120 Score: 278
Period size: 69 Copynumber: 4.0 Consensus size: 69
13832 CTCCGGGGCA
* * * * * *
13842 GCTACTGCCGCCTCGGTCTTTACCGGCTCTACCTTGGCTACTTCCTCGGCCTTTGCTGGCTCTAC
1 GCTACTACTGCCTCGGTCTTTGCCGGCTCTACCGTGGCTACTGCCTCGGTCTTTGCTGGCTCTAC
*
13907 CTTG
66 CGTG
* * *
13911 GCTACTACTGCCTCGGTCTTTGCCGGCTCCACCGTGGCTACTGCCTCGGGCTTTGCCT-CCTCTA
1 GCTACTACTGCCTCGGTCTTTGCCGGCTCTACCGTGGCTACTGCCTCGGTCTTTG-CTGGCTCTA
*
13975 CCTTG
65 CCGTG
* * * * * *
13980 GCCACTACTGCCTCAGTCTTTTCCGCCTCTACCTTGGCTACTACTGCCTCGGTCTTTGCCGGCTC
1 GCTACTACTGCCTCGGTCTTTGCCGGCTCTACCGTGG---CTACTGCCTCGGTCTTTGCTGGCTC
14045 TACCGTG
63 TACCGTG
* * * * * * *
14052 G---CTGCTGCCTCGGGCTTTGCCGGTTCTACCGTGGCTGCTGCCTCGATCTTTACTGGCTCTGC
1 GCTACTACTGCCTCGGTCTTTGCCGGCTCTACCGTGGCTACTGCCTCGGTCTTTGCTGGCTCTAC
14114 CGTG
66 CGTG
14118 GCT
1 GCT
14121 GCTGCCTCCG
Statistics
Matches: 173, Mismatches: 30, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
66 28 0.16
69 115 0.66
70 2 0.01
71 1 0.01
72 27 0.16
ACGTcount: A:0.07, C:0.37, G:0.24, T:0.32
Consensus pattern (69 bp):
GCTACTACTGCCTCGGTCTTTGCCGGCTCTACCGTGGCTACTGCCTCGGTCTTTGCTGGCTCTAC
CGTG
Found at i:26805 original size:30 final size:30
Alignment explanation
Indices: 26771--26832 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
26761 ATTTTTATCT
*
26771 TGACTTTCCTCTTATACCCTCAAATTTTAA
1 TGACTTTCCTCTTATACCCTCAAATTCTAA
*
26801 TGACTTTTCTCTTATACCCTCAAATTCTAA
1 TGACTTTCCTCTTATACCCTCAAATTCTAA
26831 TG
1 TG
26833 GCTTATTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.44
Consensus pattern (30 bp):
TGACTTTCCTCTTATACCCTCAAATTCTAA
Found at i:40967 original size:2 final size:2
Alignment explanation
Indices: 40962--40991 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
40952 TTTTTTTTCC
40962 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
40992 CAATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:67548 original size:14 final size:14
Alignment explanation
Indices: 67529--67556 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
67519 TTGCTTATCA
67529 TGAGTAGATCTTTT
1 TGAGTAGATCTTTT
67543 TGAGTAGATCTTTT
1 TGAGTAGATCTTTT
67557 ATTTTGATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
TGAGTAGATCTTTT
Found at i:70233 original size:211 final size:210
Alignment explanation
Indices: 69847--70238 Score: 531
Period size: 211 Copynumber: 1.9 Consensus size: 210
69837 ATTCAATGCT
* *
69847 AAAAAAAGTGAAGGGTTTTTCACACTTCTAATATCGTTTTTCTATTTTTTCCTAATTTATTTCTA
1 AAAAAAAGTGAAGGGTTTTTCACACTTCTAATATCGTTTTTCCATTTTGTCCTAATTTATTTCTA
* * * *
69912 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGATAATATT
66 ATTAAATCGAAACAAGATTCAGATACTCATAAAAACAAATCCTTAAATCCAATGTGGATAAGATT
*
69977 TGATTCGATGAATATAGATATTCCAAGGAGTCATTGCATCAAAAATCATGCGAAATTAAGCCGGG
131 TGATTAGATGAATATAGATATTCCAAGGAGTCATTGCA-CAAAAATCATGCGAAATTAAGCCGGG
70042 GCTCCGGAAAAACTGC
195 GCTCCGGAAAAACTGC
* * * * *
70058 AAAAAAATTGATGGG-TTTTCACGCTTCTAATATTGTTTTTCCA-TTTGTCCATGAATTTATTTT
1 AAAAAAAGTGAAGGGTTTTTCACACTTCTAATATCGTTTTTCCATTTTGTCC-T-AATTTATTTC
* * * *
70121 TAATTAGATCGAAACAAGATTCATATACTCATAAAAATAAATCCTTAAATCCAATGT-GACTGAG
64 TAATTAAATCGAAACAAGATTCAGATACTCATAAAAACAAATCCTTAAATCCAATGTGGA-TAAG
* * *
70185 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTTTGC-CAAAAATCATGC
128 ATTTGATTAGATGAATATAGATATTCCAAGGAGTC--ATTGCACAAAAATCATGC
70239 TAAACAGATC
Statistics
Matches: 157, Mismatches: 19, Indels: 10
0.84 0.10 0.05
Matches are distributed among these distances:
209 6 0.04
210 28 0.18
211 119 0.76
213 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (210 bp):
AAAAAAAGTGAAGGGTTTTTCACACTTCTAATATCGTTTTTCCATTTTGTCCTAATTTATTTCTA
ATTAAATCGAAACAAGATTCAGATACTCATAAAAACAAATCCTTAAATCCAATGTGGATAAGATT
TGATTAGATGAATATAGATATTCCAAGGAGTCATTGCACAAAAATCATGCGAAATTAAGCCGGGG
CTCCGGAAAAACTGC
Found at i:71465 original size:654 final size:653
Alignment explanation
Indices: 70056--72196 Score: 1987
Period size: 654 Copynumber: 3.3 Consensus size: 653
70046 CGGAAAAACT
* * * * *
70056 GCAAAAAAATTGATGGG-TTTTCACGCTTCTAATATTGTTTTTCCATTTGTCCATGAATTTATTT
1 GCAAAAAAAATGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTCC--GAATTTATTT
* * * * * * * *
70120 TTAATTAGATCGAAACAAGATTCATATACTCATAAAAATAAATCCTTAAATCCAATGTGACTGAG
64 CTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGACTGAG
* * * ** * ** *
70185 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCTAAACAGATCC
129 ATTTGGTTCGATGAATATAGATATTACAAGGAGTCATTGCGCCAAAAATCATGCAAAATTGAGCC
* ** *
70250 GGGGCTCCAAAACGCGTTTTTAGCCCAAAAAC-CGTGA-TGGTTAGTACACGGTTTCGGCTAAAA
194 AGGGCTCCGGAACGCGTTTTTAG-CC-AAAACTCGTGAGTGG--A--ACACGATTTCGGCTAAAA
* * * * * * ** *
70313 ----AC-AGACCTGAA----AAAT-TTTT-TCTGAATTTTTTTGCCACAATACT--TTAAAAAGA
253 TTTTACAAAAACT-AACCCGAAATATTTTCCCTCAAGTTTTTTGCCACAACACTCAGAAAAAATA
* * * * ** * * * * *
70365 TCTAATTCAATGCAAAAAAAAATTGAAAAGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTT
317 TATAATTCAACGCCAAAAAATATTGAAGGGTTTTTCACGCTTCTGATAACGTATTTCCA--ATTT
* * * * *
70430 TTCCTGAATTTATTTCTAATTAAATCGAAACAAGATTAAG-TTGCTCGTAAAAAAAAAAAAT-CT
380 TTCC-GAATTAATTTCCAATTAAATCGAAACAAGATTCAGATAG-TCGT---AAAAACAAATCCT
* * * * * * * * *
70493 TAACTCCAATGTGGCTAAGATTTGGTAAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAA
440 TAAATACAATGCGCCTGAGAGTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCAAA
* ** * * * * * * *
70558 AACCACACAAAACTGAGTCGAGGCCACGAAATGCGTTTTTAGTC-AAAAA-CAGTGAT-G-TAC-
505 AATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGCTTTGAGCCAAAAAACCA-TAATGGTTACT
* * * *
70618 -C-CGA--T---TTTGGCTAAAAACCTTACCCGAAAAATTTTTCCTCAATTTTTTTCCACAATAC
569 ACACGATTTCGATTTTGCTAAAAA-CTGACCC-AAAAGTTTTTCCTCAA-TTTTTGCCACAATAC
* *
70676 TC-ATAAAAGTATATAATTCAAC
631 TCAAAAAAAATATATAATTCAAC
* * *
70698 GTAAAAAAAATTGAAGGGTTTTTCCCGCTTCTAATATCGTTTTGCACTTTTTTCCGAA-TTAGTT
1 GCAAAAAAAA-TGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC-CTTTTTTCCGAATTTA-TT
* * * * *
70762 TATAATTAAATTGAAACAA-ATTTCAAATGCTCGTAAAAACAAATCCTTATATCCAATATGTCTG
63 TCTAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAAACAAATCCTTATATCCAATGTGACTG
* *
70826 AGATTTGGCTCGACGAATATAGATATTACAAGGAGTCATTGCGCCAAAAATCATGCAAAATTGAG
127 AGATTTGGTTCGATGAATATAGATATTACAAGGAGTCATTGCGCCAAAAATCATGCAAAATTGAG
* *
70891 CCAGGGCTCCGGAAGGCGTTTTTAGCCAAAAAC-CGTGA-T-G-ACACGATTTTGGCTAAAATTT
192 CCAGGGCTCCGGAACGCGTTTTTAGCC-AAAACTCGTGAGTGGAACACGATTTCGGCTAAAATTT
* *
70952 TACAAAAACTAACTCGAAA-AGTTTTCCCTCAA-TTTTTTGCCACAATACTCA-AGAAAAATATA
256 TACAAAAACTAACCCGAAATA-TTTTCCCTCAAGTTTTTTGCCACAACACTCAGA-AAAAATATA
* *
71014 TAATTGAACGCCAAAAAA-ATTGAAGGGTTTTTCACGCTTCTGATAACGTTTTTCC-ATATTTTC
319 TAATTCAACGCCAAAAAATATTGAAGGGTTTTTCACGCTTCTGATAACGTATTTCCAAT-TTTTC
* * *
71077 CGAATTAATTTCCAATTAAATCGAAACAAGATTTAGAT-GTTCGTAAAAACAAATCGTTAAATAG
383 CGAATTAATTTCCAATTAAATCGAAACAAGATTCAGATAG-TCGTAAAAACAAATCCTTAAATAC
* * *
71141 AATGCGCCTG-GATTTGGTTCGATGAATATAGATATTTCAAGAAGTCTTTAC-GTCAAAAATCAT
447 AATGCGCCTGAGAGTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTT-CTGCCAAAAATCAT
* *
71204 GCAAAACTGAGTCGGGGCCCC-AGAACGCGCTTTGAG-CAAAAAACCATAATGGTTAGTATACGA
511 GCAAAACTGAGTCGGGGCCCCGA-AACGCGCTTTGAGCCAAAAAACCATAATGGTTACTACACGA
* *
71267 TTTCAGTTAAAATTTTGC-AAAAACTGACCCAAAAGTTTTTGCTCAATTTTTGCCACAATATTCA
575 TTTC-G-----ATTTTGCTAAAAACTGACCCAAAAGTTTTTCCTCAATTTTTGCCACAATACTC-
*
71331 AAAAAAAATTTATAATTCAAC
633 AAAAAAAATATATAATTCAAC
* * *
71352 GCCAAAAAAATGAAAGGGTTTTTCACACTTCTAATATCGTTTTTCCTTTTTTTCCTAATTTATTT
1 GCAAAAAAAATG-AAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTTTTTCCGAATTTATTT
*
71417 CTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
64 CTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGACTGAG
* * * * *
71482 ATTTGGTTTGATGAATATTGATATTCCAAGGAGTCATTGTGTCAAAAATCATGCAAAATTGAGCC
129 ATTTGGTTCGATGAATATAGATATTACAAGGAGTCATTGCGCCAAAAATCATGCAAAATTGAGCC
*
71547 GGGGCTCCGGAACGCGTTTTTAGCCAAAACTCGTGATGGTTGGAACACGATTTCGGCTAAAATTT
194 AGGGCTCCGGAACGCGTTTTTAGCCAAAACTCGTGA--G-TGGAACACGATTTCGGCTAAAATTT
* * *
71612 TGCAAAAACTGACCCGAAATATTTTTCCTCAAGTTTTTTTGCCACAACACTCAGAAAAAATATAT
256 TACAAAAACTAACCCGAAATATTTTCCCTCAAG-TTTTTTGCCACAACACTCAGAAAAAATATAT
* * * *
71677 ATTTCAACGGCAAAAAATATTGAAGGGTTTTTCACGTTTCTGATATCGTATTTCCAATTTTTCCG
320 AATTCAACGCCAAAAAATATTGAAGGGTTTTTCACGCTTCTGATAACGTATTTCCAATTTTTCCG
* * * * * *
71742 CATTTATTTCTAATTAAATCGAAACAAGATTCATATAGTCGTAAAAATAAATCCTTAAATCCAAT
385 AATTAATTTCCAATTAAATCGAAACAAGATTCAGATAGTCGTAAAAACAAATCCTTAAATACAAT
* * *
71807 GTGGCTGAGAGTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAA
450 GCGCCTGAGAGTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCAA
* * * * * * *
71872 AACTGAGTTGGGGCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGTTACTACATGATTTCG
515 AACTGAGTCGGGGCCCCGAAACGCGCTTTGAGCCAAAAAACCATAATGGTTACTACACGATTTCG
** * * * ** *
71937 -----GCTAAAAACTGACCTGAGAGATTTTTTCTGCATTTTTTGCCACTGTACTCAGAAAAAATA
580 ATTTTGCTAAAAACTGACCCAAAAG-TTTTTCCT-CAATTTTTGCCACAATACTCAAAAAAAATA
*
71997 TATAATTCAAA
643 TATAATTCAAC
* * * * * * *
72008 GCGAAAAAGATTGACGGGCTTTTCACGCTTCTATTATCATTTTTTCCAATTTTTCCGAATTTATT
1 GC-AAAAAAAATGAAGGGTTTTTCACGCTTCTAATATC-GTTTTTCC-TTTTTTCCGAATTTATT
* ** * * *
72073 TCTAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCTTAAATCCATTGTGACTGA
63 TCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGACTGA
* * * * *
72138 GATTTGGTTGGATGAATATAGATATTTCAAGGAGT-TTTTCTGCCAAAAATAATGCAAAA
128 GATTTGGTTCGATGAATATAGATATTACAAGGAGTCATTGC-GCCAAAAATCATGCAAAA
72197 CTAAGTCGGG
Statistics
Matches: 1244, Mismatches: 182, Indels: 131
0.80 0.12 0.08
Matches are distributed among these distances:
636 16 0.01
639 2 0.00
640 94 0.08
641 20 0.02
642 30 0.02
643 173 0.14
644 33 0.03
645 31 0.02
646 36 0.03
647 23 0.02
652 15 0.01
653 22 0.02
654 216 0.17
655 26 0.02
656 55 0.04
657 151 0.12
658 1 0.00
659 1 0.00
660 46 0.04
661 1 0.00
662 42 0.03
663 102 0.08
664 82 0.07
665 26 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (653 bp):
GCAAAAAAAATGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCTTTTTTCCGAATTTATTTCT
AATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGACTGAGAT
TTGGTTCGATGAATATAGATATTACAAGGAGTCATTGCGCCAAAAATCATGCAAAATTGAGCCAG
GGCTCCGGAACGCGTTTTTAGCCAAAACTCGTGAGTGGAACACGATTTCGGCTAAAATTTTACAA
AAACTAACCCGAAATATTTTCCCTCAAGTTTTTTGCCACAACACTCAGAAAAAATATATAATTCA
ACGCCAAAAAATATTGAAGGGTTTTTCACGCTTCTGATAACGTATTTCCAATTTTTCCGAATTAA
TTTCCAATTAAATCGAAACAAGATTCAGATAGTCGTAAAAACAAATCCTTAAATACAATGCGCCT
GAGAGTTGGTTAGATGAATATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCATGCAAAACTGA
GTCGGGGCCCCGAAACGCGCTTTGAGCCAAAAAACCATAATGGTTACTACACGATTTCGATTTTG
CTAAAAACTGACCCAAAAGTTTTTCCTCAATTTTTGCCACAATACTCAAAAAAAATATATAATTC
AAC
Found at i:72112 original size:323 final size:320
Alignment explanation
Indices: 70058--72269 Score: 2108
Period size: 323 Copynumber: 6.8 Consensus size: 320
70048 GAAAAACTGC
* * * *
70058 AAAAAAATTGATGGG-TTTTCACGCTTCTAATATTGTTTTTCC-ATTTGTCCATGAATTTATTTT
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCC--GAATTTATTTC
* * * * * * *
70121 TAATTAGATCGAAACAAGATTCATATACTCATAAAAATAAATCCTTAAATCCAATGTGACTGAGA
64 TAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGA
* * *
70186 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTTTGCCAAAAATCATGCTAAACAGA-TCC
129 TTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGT-C
* * * *
70250 GGGGCTCCAAAACGCGTTTTTAGCCCAAAAACCGTGATGGTTAGTACACGGTTTCGGCTAAAAAC
193 GGGGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTACTACACGATTTCGGCTAAAAAC
* * * * ** * * *
70315 AGACCTGAAAAATTTTTTCTGAATTTTTTTGCCACAATACT-TTAAAAAGATCTAATTCAATGCA
257 TGACCCGAAAAATTTTTCCTCAA-TTTTTTGCCACAATACTCAAAAAAATATATAATTCAACGC-
70379 A
320 A
** * *
70380 AAAAAAATTGAAAAGTTTTTCACGCTTCTAATATCGTTTTTTCATTTTTTTTCCTGAATTTATTT
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA--ATTTTTCC-GAATTTATTT
* * * *
70445 CTAATTAAATCGAAACAAGATTAAGTTGCTCGTAAAAAAAAAAAAT-CTTAACTCCAATGTGGCT
63 CTAATTAAATCGAAACAAGATTTAGATGCTCGT---AAAAACAAATCCTTAAATCCAATGTGGCT
* * * * **
70509 AAGATTTGGTAAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAACCACACAAAACTGA
125 GAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGA
* * * * * *
70574 GTCGAGGCCACGAAATGCGTTTTTAGTCAAAAACAGTGAT-G-TAC--C-CGATTTTGGCTAAAA
190 GTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTACTACACGATTTCGGCTAAAA
* * * *
70634 ACCTTACCCGAAAAATTTTTCCTCAATTTTTTTCCACAATACTCATAAAAGTATATAATTCAACG
255 A-CTGACCCGAAAAATTTTTCCTCAATTTTTTGCCACAATACTCAAAAAAATATATAATTCAACG
*
70699 TA
319 CA
* * * *
70701 AAAAAAATTGAAGGGTTTTTCCCGCTTCTAATATCG-TTTTGCACTTTTTTCCGAA-TTAGTTTA
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-ATTTTTCCGAATTTA-TTTC
* * * * *
70764 TAATTAAATTGAAACAA-ATTTCAAATGCTCGTAAAAACAAATCCTTATATCCAATATGTCTGAG
64 TAATTAAATCGAAACAAGATTT-AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAG
* * * * * * *
70828 ATTTGGCTCGACGAATATAGATATTACAAGGAGTCATTGC-GCCAAAAATCATGCAAAATTGAGC
128 ATTTGGTTAGATGAATATAGATATTTCAAGGAGTC-TTTCTGCCAAAAATCATGCAAAACTGAGT
* * * * * * **
70892 CAGGGCTCCGGAAGGCGTTTTTAGCCAAAAACCGTGATGACACGATTTTGGCTA-A-AATTT-TA
192 CGGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATG----G---TT-ACTACACGATTTCGG
* * * *
70954 C-AAAAACTAACTCGAAAAGTTTTCCCTCAATTTTTTGCCACAATACTCAAGAAAAATATATAAT
249 CTAAAAACTGACCCGAAAAATTTTTCCTCAATTTTTTGCCACAATACTCAA-AAAAATATATAAT
* *
71018 TGAACGCC
313 TCAACGCA
* * * *
71026 AAAAAAATTGAAGGGTTTTTCACGCTTCTGATAACGTTTTTCC-ATATTTTCCGAATTAATTTCC
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAAT-TTTTCCGAATTTATTTCT
* * ** * *
71090 AATTAAATCGAAACAAGATTTAGATGTTCGTAAAAACAAATCGTTAAATAGAATGCGCCTG-GAT
65 AATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGAT
* * *
71154 TTGGTTCGATGAATATAGATATTTCAAGAAGTCTTTAC-GTCAAAAATCATGCAAAACTGAGTCG
130 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTGCCAAAAATCATGCAAAACTGAGTCG
* * * * * * *
71218 GGGCCCC-AGAACGCGCTTTGAGCAAAAAACCATAATGGTTAGTATACGATTTCAGTTAAAATTT
194 GGGCCCCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTACTACACGATTTC-G---------
* * * *
71282 TGC-AAAAACTGACCC-AAAAGTTTTTGCTCAA-TTTTTGCCACAATATTCAAAAAAAAATTTAT
248 -GCTAAAAACTGACCCGAAAAATTTTTCCTCAATTTTTTGCCACAATACTC--AAAAAAATATAT
*
71344 AATTCAACGCC
310 AATTCAACGCA
* ** *
71355 AAAAAAA-TGAAAGGGTTTTTCACACTTCTAATATCGTTTTTCCTTTTTTTCCTAATTTATTTCT
1 AAAAAAATTG-AAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCCGAATTTATTTCT
*
71419 AATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGAT
65 AATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGAT
* * * * * * * *
71484 TTGGTTTGATGAATATTGATATTCCAAGGAGTCATTGTGTCAAAAATCATGCAAAATTGAGCCGG
130 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGG
* * ***
71549 GGCTCCGGAACGCGTTTTTAGCC-AAAACTCGTGATGGTTGGAACACGATTTCGGCTAAAATTTT
195 GGCCCCGAAACGCGTTTTTAGCCAAAAAC-CGTGATGGTTACTACACGATTTCGGC--------T
* *
71613 GCAAAAACTGACCCGAAATATTTTTCCTCAAGTTTTTTTGCCACAACACTCAGAAAAAATATATA
251 --AAAAACTGACCCGAAAAATTTTTCCTCAA--TTTTTTGCCACAATACTCA-AAAAAATATATA
*
71678 TTTCAACGGCA
311 ATTCAAC-GCA
* * * * *
71689 AAAAATATTGAAGGGTTTTTCACGTTTCTGATATCGTATTTCCAATTTTTCCGCATTTATTTCTA
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCCGAATTTATTTCTA
* * * *
71754 ATTAAATCGAAACAAGATTCATATAG-TCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAG
66 ATTAAATCGAAACAAGATTTAGAT-GCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGAT
*
71818 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTTGG
130 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGG
*
71883 GGCCCCGAAACGCGTTTTTAGCCCAAAAACCGTGATGGTTACTACATGATTTCGGCTAAAAACTG
195 GGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTACTACACGATTTCGGCTAAAAACTG
* * * * ** * *
71948 ACCTGAGAGATTTTTTCTGC-ATTTTTTGCCACTGTACTCAGAAAAAATATATAATTCAAAGCG
259 ACCCGAAAAATTTTTCCT-CAATTTTTTGCCACAATACTCA-AAAAAATATATAATTCAACGCA
* * * * *
72011 AAAAAGATTGACGGGCTTTTCACGCTTCTATTATCATTTTTTCCAATTTTTCCGAATTTATTTCT
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATC-GTTTTTCCAATTTTTCCGAATTTATTTCT
* ** * * *
72076 AATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCTTAAATCCATTGTGACTGAGAT
65 AATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGAT
* * * *
72141 TTGGTTGGATGAATATAGATATTTCAAGGAGTTTTTCTGCCAAAAATAATGCAAAACTAAGTCGG
130 TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGG
* * * * * *
72206 GGCCCTGAAATGCGTTTTTAGCCCAAATATCGTGAT-GTAACAGTACACGATTTCGGTTAAAAAC
195 GGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTAC--TACACGATTTCGGCTAAAAAC
72270 CGAATTAATT
Statistics
Matches: 1557, Mismatches: 251, Indels: 162
0.79 0.13 0.08
Matches are distributed among these distances:
315 9 0.01
316 97 0.06
317 11 0.01
318 34 0.02
319 10 0.01
320 7 0.00
321 65 0.04
322 83 0.05
323 236 0.15
324 143 0.09
325 175 0.11
326 32 0.02
327 97 0.06
328 28 0.02
329 145 0.09
330 120 0.08
331 13 0.01
332 1 0.00
333 17 0.01
334 202 0.13
335 27 0.02
336 5 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (320 bp):
AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTCCGAATTTATTTCTA
ATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATT
TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGG
GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTACTACACGATTTCGGCTAAAAACTGAC
CCGAAAAATTTTTCCTCAATTTTTTGCCACAATACTCAAAAAAATATATAATTCAACGCA
Found at i:72618 original size:260 final size:260
Alignment explanation
Indices: 72011--72762 Score: 791
Period size: 261 Copynumber: 2.9 Consensus size: 260
72001 ATTCAAAGCG
* * * * *
72011 AAAAAGATTGACGGGCTTTTCACGCTTCTATTATCATTTTTTCCAA-TTTTTCCGAATTTATTTC
1 AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATC-GTTTTTCCAATTTTTTCCGAATTTATTTC
** * * * *
72075 TAATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCTTAAATCCATTGTGACTGAGA
65 TAATTAAATCGAAACAAGATTCAGATACTCCTAAAAATAAATCCTTAAATCCAATGTGGCTGAGA
* * * *
72140 TTTGGTTGGATGAATATAGATATTTCAAGGAGTTTTTCTGCCAAAAATAATGCAAAACTAAGTCG
130 TTTGGTTAGATGAATATAGATATTCCAAGGAGTATTGCTGCCAAAAATAATGCAAAACTAAGTCG
* * * * * * * ***
72205 GGGCCCTGAAATGCGTTTTTAGCCCAAATATCGTGATGTAACAGTACACGATTTCGGTTAAAAAC
195 GGACCCTGAAACGCGTTCTTAGCCCAAAAAACGCGATGCAACAGTACACGATTTCAACTAAAAAC
72270 C
260 C
* ** * * * *
72271 GAATTAATTAAAGGGTTTTTTCAAGCTTCTAATAACG-TTTTCACATTTTTTTCCGAATTTATTT
1 AAAAAAATTGAAGGG-TTTTTCACGCTTCTAATATCGTTTTTC-CAATTTTTTCCGAATTTATTT
* * * * * * *
72335 CAAATTAAATCTAAACAAGATTCAGATGCTCCTAAACACAAATCCTTATATCCAATGTGGCTGAT
64 CTAATTAAATCGAAACAAGATTCAGATACTCCTAAAAATAAATCCTTAAATCCAATGTGGCTGAG
* * * * * * *
72400 ATTTGATTTGATGAATATAGATATTCCAAGGAGTCATTGC-GCCAAGAATCATGTAAAATTGAGT
129 ATTTGGTTAGATGAATATAGATATTCCAAGGAGT-ATTGCTGCCAAAAATAATGCAAAACTAAGT
**
72464 CGGGACTCCT-AAACGCGTTCTTAG-CCAAAAAACGCGAT-CATTAGTACACGATTTCAACTAAA
193 CGGGAC-CCTGAAACGCGTTCTTAGCCCAAAAAACGCGATGCAACAGTACACGATTTCAACTAAA
***
72526 ATTTT
257 A-ACC
72531 AAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCGAATTTATTTC
1 AAAAAA-ATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCGAATTTATTTC
*
72596 TAATTAAATCGAAACAAGATTCAGATACTCGC-AAAAATAAATCCTTAAATCCAATCTGGCTGAG
65 TAATTAAATCGAAACAAGATTCAGATACTC-CTAAAAATAAATCCTTAAATCCAATGTGGCTGAG
* * *
72660 ATTTGGTTAGATGAATATAGATATTCCAACTTCGAAGTAGTCTTTCTGCTAAAAATAATGCAAAA
129 ATTTGGTTAGATGAATATAGATATTCCAA----G--G-AGTATTGCTGCCAAAAATAATGCAAAA
* *
72725 CTAAGTCGAGG-CCCCGAAACGCGTTTTTAGCCCAAAAA
187 CTAAGTCG-GGACCCTGAAACGCGTTCTTAGCCCAAAAA
72763 TCATGATGAT
Statistics
Matches: 395, Mismatches: 77, Indels: 32
0.78 0.15 0.06
Matches are distributed among these distances:
259 24 0.06
260 146 0.37
261 166 0.42
262 6 0.02
264 1 0.00
266 6 0.02
267 37 0.09
268 9 0.02
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (260 bp):
AAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCGAATTTATTTCT
AATTAAATCGAAACAAGATTCAGATACTCCTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAT
TTGGTTAGATGAATATAGATATTCCAAGGAGTATTGCTGCCAAAAATAATGCAAAACTAAGTCGG
GACCCTGAAACGCGTTCTTAGCCCAAAAAACGCGATGCAACAGTACACGATTTCAACTAAAAACC
Found at i:73217 original size:324 final size:324
Alignment explanation
Indices: 72531--73816 Score: 1697
Period size: 324 Copynumber: 3.9 Consensus size: 324
72521 CTAAAATTTT
* * *
72531 AAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCGAATTTATTTC
1 AAAAAA-ATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTTCCGAATTTATTTC
* *
72596 TAATTAAATCGAAACAAGATTCAGATACTCGCAAAAATAAATCCTTAAATCCAATCTGGCTGAGA
65 TAATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGA
72661 TTTGGTTAGATGAATATAGATATTCCAACTTCGAAGTAGTCTTTCTGCTAAAAATAATGCAAAAC
130 TTTGGTTAGATGAATATAGATATTCCAA----G--G-AGTCTTTCTGCTAAAAATAATGCAAAAC
* * * *
72726 TAAGTCGAGGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGATTAGGAAACGATTT-CGAC
188 TAAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCG-C
* * * *
72790 TAAAAACTGACCTGAAAATTTTTTTTCTTAAATTTATTGCCACAATACTTAGAAAAAATAAATAA
252 TAAAAACTGACCTGAAAATTTTTTTTC-TGAATTTTTTGCCACAATACTCAGAAAAAATATATAA
*
72855 TT-AACGCC
316 TTCAACGTC
* * * *
72863 AAAAAGATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCTAATTTTTACCGAATTTATTTCA
1 AAAAAAATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTTCCGAATTTATTTCT
* *
72928 AATTAAATCGAAACAAGATTCAGATACTCGTAAAAGTAAATCCTTAAATCCAATGTGGCTGAAAT
66 AATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAT
* * *
72993 ATGGTCAGATGAATATAGATATTCCAAGGAGTCTTTCTGCGAAAAATAATGCAAAACTAAGTCGG
131 TTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCTAAAAATAATGCAAAACTAAGTCGG
* * *
73058 GGGCTCGAAATGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCGCTAAAAACTG
196 GGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCGCTAAAAACTG
* * *
73123 ACCTGAAAATTTTTTTTCTGATTTTTTTGCCAAAAGACTCAGAAAAAATATATAATTCAACGTC
261 ACCTGAAAATTTTTTTTCTGAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGTC
* * *
73187 AAAAAAATTGACGGGCTTTTCATGCTTCTATTAACATTTTTCCAATTTTTTCCGAATTTATTTCT
1 AAAAAAATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTTCCGAATTTATTTCT
** * *
73252 AATTAAATCGAAACAAGATTTTGATAATCGTAAAAATAAATCCTTAAATCCAACGTGGCTGAGAT
66 AATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAT
* * * * * *
73317 TTAGTTTGACGAATATAGATATACCAAGGAGTCTTTCTGCTAAAAATAATGTAAAACTGAGTCGG
131 TTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCTAAAAATAATGCAAAACTAAGTCGG
* *** * *
73382 GGTCCCGAAACGCGTTTTTAGGTAAAAAATCGTGATGG-TAGTACACGATTTCGGCTAAAAACTG
196 GGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCGCTAAAAACTG
*** * *
73446 ACCTGAAAA--AAATTT-TGAATTTTTTGCACACAATACCCAGAAAAAATATATAATTCAATGTC
261 ACCTGAAAATTTTTTTTCTGAATTTTTTGC-CACAATACTCAGAAAAAATATATAATTCAACGTC
* * ** *
73508 AAAAAGATTGACGGGATTTTCACTATTCTATTATCGTTTTTCCAA-TTTTTCTGAATTTATTTCT
1 AAAAAAATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTTCCGAATTTATTTCT
** *
73572 AATTAAATCGAAACAAGATTTTGATACTCGTAGAAATAAATCCTTAAATCCAATGTGGCTGAGAT
66 AATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAT
* * * * *
73637 TTGGTTAGATGAATATAGATATTCTAAGGAGTCTTTCAGCCAAAAGTAAAGCAAAAC-AGAGTCG
131 TTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCTAAAAATAATGCAAAACTA-AGTCG
* * * *
73701 GGGCCCCGAAACACGTTTTTAGCTCAAAAATCGTGATGGTTAGTACACGATTTCGGCTAAAAACT
195 GGGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCGCTAAAAACT
* ** * *
73766 GACTTGAATCTTTTTTTTTTTTATGAATTTTCTGCCACAATACTCAGAAAA
260 GACCTGAA----AATTTTTTTTCTGAATTTTTTGCCACAATACTCAGAAAA
73817 TAAATCCTTA
Statistics
Matches: 841, Mismatches: 101, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
320 178 0.21
321 103 0.12
323 66 0.08
324 317 0.38
325 3 0.00
327 19 0.02
328 11 0.01
331 139 0.17
332 5 0.01
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (324 bp):
AAAAAAATTGACGGGCTTTTCACGCTTCTATTATCGTTTTTCCAATTTTTTCCGAATTTATTTCT
AATTAAATCGAAACAAGATTCAGATACTCGTAAAAATAAATCCTTAAATCCAATGTGGCTGAGAT
TTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTCTGCTAAAAATAATGCAAAACTAAGTCGG
GGCCCCGAAACGCGTTTTTAGCCCAAAAATCATGATGGTTAGTACACGATTTCCGCTAAAAACTG
ACCTGAAAATTTTTTTTCTGAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGTC
Found at i:73971 original size:209 final size:209
Alignment explanation
Indices: 73605--73982 Score: 639
Period size: 209 Copynumber: 1.8 Consensus size: 209
73595 ATACTCGTAG
* *
73605 AAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCTAAGGAGTC
1 AAATAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGTC
*
73670 TTTCAGCCAAAAGTAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAGCTCAAAAATCGT
66 TTTCAGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAGCTCAAAAATCGT
* *
73735 GATGGTTAGTACACGATTTCGGCTAAAAACTGACTTGAATCTTTTTTTTTTTTATGAATTTTCTG
131 GATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAATCTTTTTTTTTTTTATGAATTTTCTG
73800 CCACAATACTCAGA
196 CCACAATACTCAGA
*
73814 AAATAAATCCTTAAGTCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGTC
1 AAATAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGTC
* * * * * * *
73879 TTTCTGTCAAAAATAATGCAAAACTGAGTCGGTGCCCCGAAACGCGTTTTTAGCTTAAAAATCGT
66 TTTCAGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAGCTCAAAAATCGT
73944 GATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAA
131 GATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAA
73983 AAGTTTTTTT
Statistics
Matches: 156, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
209 156 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (209 bp):
AAATAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGTC
TTTCAGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAGCTCAAAAATCGT
GATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAATCTTTTTTTTTTTTATGAATTTTCTG
CCACAATACTCAGA
Found at i:74289 original size:530 final size:529
Alignment explanation
Indices: 73284--74303 Score: 1508
Period size: 530 Copynumber: 1.9 Consensus size: 529
73274 GATAATCGTA
*
73284 AAAATAAATCCTTAAATCCAACGTGGCTGAGATTTAGTTTGACGAATATAGATATACCAAGGAGT
1 AAAATAAATCCTTAAATCCAACGTGGCTGAGATTTAGTTAGACGAATATAGATATACCAAGGAGT
* * *
73349 CTTTCTGCTAAAAATAATGTAAAACTGAGTCGGGGTCCCGAAACGCGTTTTTAGGTAAAAAATCG
66 CTTTCTGCTAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAAATCG
* *
73414 TGATGGTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAAAATTTTGAATTTTTTGCACACAA
131 TGATGGTAGTACACGATTTCAGCTAAAAACTGACCTGAAAAAAATTTTCAATTTTTTGCACACAA
* * * ** * * *
73479 TACCCAGAAAAAATATATAATTCAATGTCAAAAAGATTGACGGGATTTTCACTATTCTATTATCG
196 TACCCAGAAAAAATATATAATTCAAAGCCAAAAAAATTGAAAGGATTTTCACGATTCTAATATAG
* * ** * *
73544 TTTTTCCAATTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACTCGTAGAAAT
261 TTTTTCCAATTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTGAGATACACGTAAAAAT
* *
73609 AAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCTAAGGAGTCTTTC
326 AAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGTCTTTC
* *
73674 AGCCAAAAGTAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAGCTCAAAAATCGTGATG
391 AGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAACTCAAAAATCGTGATG
* * *
73739 GTTAGTACACGATTTCGGCTAAAAACTGACTTGAATCTTTTTTTTTTTTATGAATTTTCTGCCAC
456 GTTAGTAAACGATCTCGGCTAAAAACTGACCTGAATCTTTTTTTTTTTTATGAATTTTCTGCCAC
73804 AATACTCAG
521 AATACTCAG
* * * *
73813 AAAATAAATCCTTAAGTCCAATGTGGCTGAGATTT-GATTAGATGAATATAGATATTCCAAGGAG
1 AAAATAAATCCTTAAATCCAACGTGGCTGAGATTTAG-TTAGACGAATATAGATATACCAAGGAG
* *
73877 TCTTTCTG-TCAAAAATAATGCAAAACTGAGTCGGTGCCCCGAAACGCGTTTTTAGCTTAAAAAT
65 TCTTTCTGCT-AAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAAAT
***
73941 CGTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAAGTTTTTTTCAATTTTTTGC-C
129 CGTGATGG-TAGTACACGATTTCAGCTAAAAACTGACCTGAAAA-AAATTTTCAATTTTTTGCAC
** * * * * * *
74005 ACAATACTTAGAAAAATTATATAATTTAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAAT
192 ACAATACCCAGAAAAAATATATAATTCAAAGCCAAAAAAATTGAAAGGATTTTCACGATTCTAAT
74070 ATAGTTTTTCCAATATTTTCCGAATTCATTT-TAATTAAATCGAAACAAGATTGAGATACACGTA
257 ATAGTTTTTCCAAT-TTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTGAGATACACGTA
74134 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGT
321 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGT
* ** * * * *
74199 CTTTCTGCCAAAAATATTGCAAAACTGAGTCGGGGCCGCGGAACGCGTTTTTAACTCAAAAATCG
386 CTTTCAGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAACTCAAAAATCG
74264 TGATGGTTAGTAAACGATCTCGGCTAAAAACTGACCTGAA
451 TGATGGTTAGTAAACGATCTCGGCTAAAAACTGACCTGAA
74304 AAATTATTTT
Statistics
Matches: 435, Mismatches: 51, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
528 2 0.00
529 122 0.28
530 283 0.65
531 28 0.06
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (529 bp):
AAAATAAATCCTTAAATCCAACGTGGCTGAGATTTAGTTAGACGAATATAGATATACCAAGGAGT
CTTTCTGCTAAAAATAATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCTAAAAAATCG
TGATGGTAGTACACGATTTCAGCTAAAAACTGACCTGAAAAAAATTTTCAATTTTTTGCACACAA
TACCCAGAAAAAATATATAATTCAAAGCCAAAAAAATTGAAAGGATTTTCACGATTCTAATATAG
TTTTTCCAATTTTTCCGAATTCATTTCTAATTAAATCGAAACAAGATTGAGATACACGTAAAAAT
AAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGTCTTTC
AGCCAAAAATAAAGCAAAACAGAGTCGGGGCCCCGAAACACGTTTTTAACTCAAAAATCGTGATG
GTTAGTAAACGATCTCGGCTAAAAACTGACCTGAATCTTTTTTTTTTTTATGAATTTTCTGCCAC
AATACTCAG
Found at i:74526 original size:324 final size:322
Alignment explanation
Indices: 73813--75559 Score: 2233
Period size: 321 Copynumber: 5.4 Consensus size: 322
73803 CAATACTCAG
* *
73813 AAAATAAATCCTTAAGTCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * *
73878 CTTTCTGTCAAAAATAATGCAAAACTGAGTCGGTGCCCCGAAACGCGTTTTTAGCTTAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGG-GGCCCGAAACGCGTTTTTAGCTCAAAAATCG
* *
73943 TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAAGTTTTTTTC--AATTTTTTGCCA
130 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCA
* * * * * * *** * *
74006 CAATACTTAGAAAAATTATATAATTTAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTCAGAAAAAATATATAATTCAATG-CGAAAAAATTGACGGGCTTTTCACGCTTCTATTA
* * **
74071 T-AGTTTTTCCAATATTTTCCGAATTCATTT-TAATTAAATCGAAACAAGATTGAGATACA-CGT
259 TCA-TTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATA-ATCGT
74133 A
322 A
* *
74134 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * *
74199 CTTTCTGCCAAAAATATTGCAAAACTGAGTCGGGGCCGCGGAACGCGTTTTTAACTCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCC-CGAAACGCGTTTTTAGCTCAAAAATCG
* * * **
74264 TGATGGTTAGTAAACGATCTCGGCTAAAAACTGACCTGAAAAATTATTTTCTGAATAATTTGCCA
130 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCA
* * * *
74329 CGATACCCAGAAAAAATATATAATTGAATGCGAAAATGATTGACGGGCTTTTCACGCTTCTATTA
195 CAATACTCAGAAAAAATATATAATTCAATGCGAAAA-AATTGACGGGCTTTTCACGCTTCTATTA
* *
74394 TCATTTTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAATAAGATTTTGATAATCGTA
259 TCATTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTA
* * *
74458 AAACTAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTGGATGAATATAGATATTTCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * *
74523 CTTTCTACCAAAAATAATGCAAAACTCAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATTG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGG-CCCGAAACGCGTTTTTAGCTCAAAAATCG
* * * * * *
74588 TGATGGTTAGTACACCATTTCAGCTAAAAACTGACCAGAAAGATTTTTTTTTCAATTTTTTGCCA
130 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCA
* * * * * *** * *
74653 CAATACTTAGAAAAACTATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTCAGAAAAAATATATAATTCAATG-CGAAAAAATTGACGGGCTTTTCACGCTTCTATTA
* **
74718 T-AGTTTTTCCAATTTTTTACGAATTTATTT-TAATTAAATCGAAACAAGATTCAGATACA-CGT
259 TCA-TTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATA-ATCGT
74780 A
322 A
*
74781 AAAATAAATCCTTAAATCTAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * *
74846 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGACCCTGAAACGTGTTTTTAGCGCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCCC-GAAACGCGTTTTTAGCTCAAAAATCG
* * * *
74911 TGATGATTAGTACACTATTTCGGCTAAAAACTTACCTAAAAAAATTTTTTTTCTGAATTTTTTGC
130 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCT-GAAAAA-TTTTTTTCTGAATTTTTTGC
* *
74976 CACAATACTCAGAAAAAATATATAATCCAATGCCGAAAAAATTGTCGGGCTTTTCACGCTTCTAT
193 CACAATACTCAGAAAAAATATATAATTCAATG-CGAAAAAATTGACGGGCTTTTCACGCTTCTAT
* * * * *
75041 TATCGTTTTTCTAA-TTTTTCTGAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATACTCGT
257 TATCATTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGT
75105 A
322 A
* * * *
75106 AAAATAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGAAGAATATAGATATTCCATGTAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * ** *
75171 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCTGAAACGCGTTTTTAGCGCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCCC-GAAACGCGTTTTTAGCTCAAAAATCG
* * *
75236 TGATGGTTAATACACGATTTCGACTAAAAACTGACCTGAAAATTTTTTTTCTGAATTTTTTGCCA
130 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCA
* * * * *
75301 CAATACTCAG-AAAAATATATAATTCAATACCGAAAAGATTGTCGGACTTTTCACTCTTCTATTA
195 CAATACTCAGAAAAAATATATAATTCAAT-GCGAAAAAATTGACGGGCTTTTCACGCTTCTATTA
* * * * *
75365 TCGTTTTTCTAA--TTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTTTGATACTTGTA
259 TCATTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTA
** * * * *
75427 AAAATAAATTGTTGAATCCAATGTGGCTGAGATTTGGTTAAATGAATATAGATATTTCAAGAAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * *
75492 CTTTCTGCGAAAAATAATGC-AAACTGAGTCGGGGTCCCGAAACACGTTTTTAAGTTAAAAAATC
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGG-CCCGAAACGCGTTTTT-AGCTCAAAAATC
75556 GTGA
129 GTGA
75560 CGTACACTAT
Statistics
Matches: 1243, Mismatches: 163, Indels: 40
0.86 0.11 0.03
Matches are distributed among these distances:
320 26 0.02
321 298 0.24
322 68 0.05
323 289 0.23
324 293 0.24
325 269 0.22
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (322 bp):
AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
CTTTCTGCCAAAAATAATGCAAAACTGAGTCGGGGCCCGAAACGCGTTTTTAGCTCAAAAATCGT
GATGGTTAGTACACGATTTCGGCTAAAAACTGACCTGAAAAATTTTTTTCTGAATTTTTTGCCAC
AATACTCAGAAAAAATATATAATTCAATGCGAAAAAATTGACGGGCTTTTCACGCTTCTATTATC
ATTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATAATCGTA
Found at i:74898 original size:323 final size:323
Alignment explanation
Indices: 73813--75543 Score: 2234
Period size: 323 Copynumber: 5.4 Consensus size: 323
73803 CAATACTCAG
* *
73813 AAAATAAATCCTTAAGTCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* **
73878 CTTTCTGTCAAAAATAATGCAAAACTGAGTC-GGTGCCCCGAAACGCGTTTTTAGCTTAAAAATC
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGG-GCCCCGAAACGCGTTTTTAGCGCAAAAATC
* *
73942 GTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAA-GTTTTTTTCAATTTTTTGCCA
130 GTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAATTTTTTTTTGAATTTTTTGCCA
* * * * * *
74006 CAATACTTAGAAAAATTATATAATTTAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTCAGAAAAAATATATAATTCAAAGCCAAAAAAATTTAAAGGCTTTTCACGCTTCTATTA
* * **
74071 TAGTTTTTCCAATATTTTCCGAATTCATTT-TAATTAAATCGAAACAAGATTGAGATACACGTA
260 TAGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACACGTA
* *
74134 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * * * *
74199 CTTTCTGCCAAAAATATTGCAAAACTGAGTCGGGGCCGCGGAACGCGTTTTTAACTCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCGCAAAAATCG
* * * * * **
74264 TGATGGTTAGTAAACGATCTCGGCTAAAAACTGACCTGAAAAATTATTTTCTGAATAATTTGCCA
131 TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTG-AAAATTTTTTTTTGAATTTTTTGCCA
* * * * * ** * **
74329 CGATACCCAGAAAAAATATATAATTGAATGCGAAAATGATTGACGGGCTTTTCACGCTTCTATTA
195 CAATACTCAGAAAAAATATATAATTCAAAGCCAAAAAAATTTAAAGGCTTTTCACGCTTCTATTA
* *
74394 TCA-TTTTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAATAAGATTTTGATA-ATCGT
260 T-AGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACA-CGT
74457 A
323 A
* * *
74458 AAACTAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTGGATGAATATAGATATTTCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * * *
74523 CTTTCTACCAAAAATAATGCAAAACTCAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATTG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCGCAAAAATCG
* * *
74588 TGATGGTTAGTACACCATTTCAGCTAAAAACTGACCAGAAAGATTTTTTTTTCAATTTTTTGCCA
131 TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAA-ATTTTTTTTTGAATTTTTTGCCA
* * * * *
74653 CAATACTTAGAAAAACTATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTCAGAAAAAATATATAATTCAAAGCCAAAAAAATTTAAAGGCTTTTCACGCTTCTATTA
* **
74718 TAGTTTTTCCAATTTTTTACGAATTTATTT-TAATTAAATCGAAACAAGATTCAGATACACGTA
260 TAGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACACGTA
*
74781 AAAATAAATCCTTAAATCTAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * *
74846 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGACCCTGAAACGTGTTTTTAGCGCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCGCAAAAATCG
* * * * *
74911 TGATGATTAGTACACTATTTCGGCTAAAAACTTACCTAAAAAAATTTTTTTTCTGAATTTTTTGC
131 TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCT--GAAAATTTTTTTT-TGAATTTTTTGC
* * * **
74976 CACAATACTCAGAAAAAATATATAATCCAATGCCGAAAAAATTGT-CGGGCTTTTCACGCTTCTA
193 CACAATACTCAGAAAAAATATATAATTCAAAGCCAAAAAAATT-TAAAGGCTTTTCACGCTTCTA
* * * * *
75040 TTATCGTTTTTCTAA-TTTTTCTGAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATACTCG
257 TTATAGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACACG
75104 TA
322 TA
* * * *
75106 AAAATAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGAAGAATATAGATATTCCATGTAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * *
75171 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCTGAAACGCGTTTTTAGCGCAAAAATCG
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCGCAAAAATCG
*
75236 TGATGGTTAATACACGATTTC-GACTAAAAACTGACCTGAAAATTTTTTTTCTGAATTTTTTGCC
131 TGATGGTTAGTACACGATTTCAG-CTAAAAACTGACCTGAAAATTTTTTTT-TGAATTTTTTGCC
* * * *
75300 ACAATACTCAG-AAAAATATATAATTCAATA-CCGAAAAGATTGT--CGGACTTTTCACTCTTCT
194 ACAATACTCAGAAAAAATATATAATTCAA-AGCCAAAAAAATT-TAAAGG-CTTTTCACGCTTCT
* * * **
75361 ATTATCGTTTTTCTAA--TTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTTTGATACTT
256 ATTATAGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACAC
75424 GTA
321 GTA
** * * * *
75427 AAAATAAATTGTTGAATCCAATGTGGCTGAGATTTGGTTAAATGAATATAGATATTTCAAGAAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* * * *
75492 CTTTCTGCGAAAAATAATGC-AAACTGAGTCGGGGTCCCGAAACACGTTTTTA
66 CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTA
75544 AGTTAAAAAA
Statistics
Matches: 1232, Mismatches: 161, Indels: 35
0.86 0.11 0.02
Matches are distributed among these distances:
320 26 0.02
321 274 0.22
322 63 0.05
323 310 0.25
324 299 0.24
325 259 0.21
326 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (323 bp):
AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
CTTTCTGCCAAAAATAATGCAAAACTGAGTCAGGGCCCCGAAACGCGTTTTTAGCGCAAAAATCG
TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAATTTTTTTTTGAATTTTTTGCCAC
AATACTCAGAAAAAATATATAATTCAAAGCCAAAAAAATTTAAAGGCTTTTCACGCTTCTATTAT
AGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTTGATACACGTA
Found at i:75283 original size:647 final size:644
Alignment explanation
Indices: 73813--75544 Score: 2453
Period size: 647 Copynumber: 2.7 Consensus size: 644
73803 CAATACTCAG
* *
73813 AAAATAAATCCTTAAGTCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTCCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
** * * **
73878 CTTTCTGTCAAAAATAATGCAAAACTGAG-TCGGTGCCCCGAAACGCGTTTTTAGCTTAAAAATC
66 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGG-GCCCCGAAACGCGTTTTTAGCCCAAAAATC
*
73942 GTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAA-GTTTTTTTCAATTTTTTGCCA
130 GTGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAATTTTTTTTTCAATTTTTTGCCA
*
74006 CAATACTTAGAAAAATTATATAATTTAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTTAGAAAAA-TATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
* *
74071 TAGTTTTTCCAATATTTTCCGAATTCATTTTAATTAAATCGAAACAAGATTGAGATACACGTAAA
259 TAGTTTTTCCAAT-TTTTCCGAATTTATTTTAATTAAATCGAAACAAGATTCAGATACACGTAAA
* *
74136 AATAAATCCTTAAATCCAATGTGGCTGAGATTTAGTTAGATGAATATAGATATTCAAAGGAGTCT
323 AATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCT
* * * * *
74201 TTCTGCCAAAAATATTGCAAAACTGAGTCGGGGCCGCGGAACGCGTTTTTAACTCAAAAATCGTG
388 TTCTGCCAAAAATAATGCAAAACTGAGTCAGGACCGCGAAACGCGTTTTTAACGCAAAAATCGTG
* * *
74266 ATGGTTAGTAAACGATCTCGGCTAAAAACTGACCTGAAAAATTATTTTCTGAATAATTTGCCACG
453 ATGATTAGTAAACGATCTCGGCTAAAAACTGACCTAAAAAATTATTTTCTGAATAATTTGCCACA
** *
74331 ATACCCAGAAAAAATATATAATTGAATGCGAAAATGATTGACGGGCTTTTCACGCTTCTATTATC
518 ATACCCAGAAAAAATATATAATCCAATGCGAAAATAATTGACGGGCTTTTCACGCTTCTATTATC
*
74396 ATTTTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAATAAGATTTTGATAATCGTA
583 ATTTTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATAATCGTA
* * *
74458 AAACTAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTGGATGAATATAGATATTTCAAGGAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* ** *
74523 CTTTCTACCAAAAATAATGCAAAACTCAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAAAATTG
66 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCG
* *
74588 TGATGGTTAGTACACCATTTCAGCTAAAAACTGACCAGAAAGATTTTTTTTTCAATTTTTTGCCA
131 TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAA-ATTTTTTTTTCAATTTTTTGCCA
74653 CAATACTTAGAAAAACTATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
195 CAATACTTAGAAAAA-TATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATA
*
74718 TAGTTTTTCCAATTTTTTACGAATTTATTTTAATTAAATCGAAACAAGATTCAGATACACGTAAA
259 TAGTTTTTCCAA-TTTTTCCGAATTTATTTTAATTAAATCGAAACAAGATTCAGATACACGTAAA
*
74783 AATAAATCCTTAAATCTAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCT
323 AATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCT
* *
74848 TTCTGCCAAAAATAATGCAAAACTGAGTCAGGACC-CTGAAACGTGTTTTTAGCGCAAAAATCGT
388 TTCTGCCAAAAATAATGCAAAACTGAGTCAGGACCGC-GAAACGCGTTTTTAACGCAAAAATCGT
* * * * * **
74912 GATGATTAGTACACTATTTCGGCTAAAAACTTACCTAAAAAAATTTTTTTTCTGAATTTTTTGCC
452 GATGATTAGTAAACGATCTCGGCTAAAAACTGACCT-AAAAAA-TTATTTTCTGAATAATTTGCC
* *
74977 ACAATACTCAGAAAAAATATATAATCCAATGCCGAAAA-AATTGTCGGGCTTTTCACGCTTCTAT
515 ACAATACCCAGAAAAAATATATAATCCAATG-CGAAAATAATTGACGGGCTTTTCACGCTTCTAT
* * ** *
75041 TATCGTTTTTCTAA-TTTTTCTGAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATACTCGT
579 TATCATTTTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATAATCGT
75105 A
644 A
* * * *
75106 AAAATAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGAAGAATATAGATATTCCATGTAGT
1 AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
* *
75171 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCTGAAACGCGTTTTTAGCGCAAAAATCG
66 CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCG
* *
75236 TGATGGTTAATACACGATTTC-GACTAAAAACTGACCTGAAAATTTTTTTTCTGAATTTTTTGCC
131 TGATGGTTAGTACACGATTTCAG-CTAAAAACTGACCTGAAAATTTTTTTT-TCAATTTTTTGCC
* * * ** * *
75300 ACAATACTCAGAAAAATATATAATTCAATA-CCGAAAAGATTGT--CGGACTTTTCACTCTTCTA
194 ACAATACTTAGAAAAATATATAATTCAA-AGCCAAAAAAATT-TAAATG-TTTTTCACGCTTCTA
* * * * ** **
75362 TTATCGTTTTTCTAA-TTTTCCGAATTTATTTCTAATTAAATTGAAACAAGATTTTGATACTTGT
256 ATATAGTTTTTCCAATTTTTCCGAATTTATTT-TAATTAAATCGAAACAAGATTCAGATACACGT
** * * * *
75426 AAAAATAAATTGTTGAATCCAATGTGGCTGAGATTTGGTTAAATGAATATAGATATTTCAAGAAG
320 AAAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAG
* * * *
75491 TCTTTCTGCGAAAAATAATGC-AAACTGAGTCGGGGTCC-CGAAACACGTTTTTAA
385 TCTTTCTGCCAAAAATAATGCAAAACTGAGTC-AGGACCGCGAAACGCGTTTTTAA
75545 GTTAAAAAAT
Statistics
Matches: 974, Mismatches: 98, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
645 190 0.20
646 115 0.12
647 347 0.36
648 235 0.24
649 81 0.08
650 6 0.01
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (644 bp):
AAAATAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGT
CTTTCTACCAAAAATAATGCAAAACTAAGTTAGGGCCCCGAAACGCGTTTTTAGCCCAAAAATCG
TGATGGTTAGTACACGATTTCAGCTAAAAACTGACCTGAAAATTTTTTTTTCAATTTTTTGCCAC
AATACTTAGAAAAATATATAATTCAAAGCCAAAAAAATTTAAATGTTTTTCACGCTTCTAATATA
GTTTTTCCAATTTTTCCGAATTTATTTTAATTAAATCGAAACAAGATTCAGATACACGTAAAAAT
AAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTCCAAGGAGTCTTTC
TGCCAAAAATAATGCAAAACTGAGTCAGGACCGCGAAACGCGTTTTTAACGCAAAAATCGTGATG
ATTAGTAAACGATCTCGGCTAAAAACTGACCTAAAAAATTATTTTCTGAATAATTTGCCACAATA
CCCAGAAAAAATATATAATCCAATGCGAAAATAATTGACGGGCTTTTCACGCTTCTATTATCATT
TTTCCAATTTTTTCCAAATTTATTTCTAATTAAATCGAAAGAAGATTTTGATAATCGTA
Done.