Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01016401.1 Corchorus olitorius cultivar O-4 contig16434, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112790

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--227
41
1.9
42
87
10
119
16
20
33
30
1.94
1463--3302
319
5.8
320
84
6
2269
35
17
14
33
1.89
1463--3302
622
2.9
624
84
6
2413
35
17
14
33
1.89
3595--3644
17
3.0
16
85
8
64
22
22
22
34
1.97
23947--24003
25
2.4
24
80
11
64
68
1
21
8
1.26
30480--30512
15
2.1
16
88
5
50
33
9
27
30
1.88
32279--32317
6
6.5
6
93
0
69
17
64
2
15
1.41
37457--37500
20
2.1
21
91
4
72
40
9
25
25
1.84
59002--59046
23
2.0
23
100
0
90
40
11
17
31
1.85
90753--90805
20
2.7
20
93
0
97
39
3
7
49
1.49
91930--91960
12
2.7
11
90
9
53
87
0
12
0
0.55
92166--92211
20
2.5
19
79
10
51
2
45
2
50
1.26
96581--96625
23
2.0
23
100
0
90
35
17
15
31
1.92
105472--105500
3
9.7
3
100
0
58
34
0
0
65
0.93

Tables:   1

The End!